Equus caballus (horse): 100033858
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Entry
100033858 CDS
T01058
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100033858 (COL12A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ecb00535
]
100033858 (COL12A1)
Proteoglycans [BR:
ecb00535
]
Extracellular matrix (ECM) proteoglycans
Others
100033858 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
Interfer-bind
DUF4998
VWA_3
Copine
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
100033858
NCBI-ProteinID:
XP_001914777
Ensembl:
ENSECAG00000025065
VGNC:
16723
LinkDB
All DBs
Position
10:complement(30375002..30483198)
Genome browser
AA seq
3120 aa
AA seq
DB search
MRTRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWARPADPIVGYRITVD
PTTDGPTKEFTLAASTTETLLSDLIPEIEYVVTITSYDEVEESVPVIGQLTIQTGGPMKP
GEKKSGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVG
VVQYSSDPRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLIKNTFMESAGARVG
FPKVAIIITDGKSQDEVEIPARELRSIGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVIEPPSNLIAMEVSSKYIKLGWSASPSP
VTGYKILLTPMTAGSRQHALSVGPQTTMLSVRDLSADTEYQISVSAMKGLTSSEPVSIME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPRDLSFSEVTSYSFKTNWSPAGENVF
SYHITYKEATGDDEVTVVEPAASTSVVLNNLKPETLYFVNVTAEYEDGFSLPIAGEETTA
EVKGAPRNLKVTDETTDSFKITWTQAPGRVLRYRIRYRPVAGGESKEVTTPANQRRRTLE
NLTPDTKYEVSVVPEYFSGPGSPLTGNAATEEVRGNPRDLRVSDPTTSSMRLSWSGAPGK
VKRYLVTYTPVAGGEAQEVTVKGDTTSTVLSGLNEGTRYALSVTALYASGAGDALFGEGT
TLEERGSPQDLITKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVEAGEKNLPEDAIHT
VIENLQPETKYKISVFATYSSGEGEPLTGEATTELSQDSKTLKVDEETENTMRVTWKPAP
GKVINYRVVYRPRGGGRQMVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKTGEGKLRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFEIGPKRVQIALAQYSGDPRTEWQLNAHKDKQ
SLLEAVANLPYKGGNTLTGMALNFIRQQSFKTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAVGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSLRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRLERSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMRVQWQPVGGA
TGYSLSYEPVNATEPTKPKEMRVGPTVNDVQLTDLFPNTEYAVTVQAALHDLTSEPVTAR
KVTLPLPRPRDLKLRDVTHSTMNVLWEPVPGKVRKYIVRYKTPEEDVKEVEVDRSRTSTP
LRDLLSQTLYTVSVSAMYDEGESPAAAAQETTRTVPAPTNLRITEVSPESFRGTWDHGAS
DVSLYRITWAPLGSSDKMETIVNGDENTLVFENLNPNTLYEVSVTAIYPDESESDDLIGS
ERTPRLIPLTTQAPKSGPRNLQVYNATSYSLTVKWDSASGRVQKYRITYQPSTGEGNEQT
TTIGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTS
TLNVRWDHAEGNPRQYKLFYAPTAGGPEELVSLPGNTNYAILRSLQPDTPYTVTVVPVYT
EGDGGRTSDTGRTLVRGLARNIQVYNPTPHSLDVRWDPAPGPVQQYRIVHSPEAGTRPPE
SMVVPGNTRMVRLEQLIPDTPYSVNIVALYSDGEGNPSPGQGRTLPRGGPRNLRVFGETT
NSLSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQSDTPYKITVIAV
YEDGDGGHLIGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPAGSNEP
MEVFVGEVTSYTLHNLDPSTTYDVNVYAQYDSGLSVPLTDQGTTLYLNVTDLKTDQIGWD
TFCVRWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDTDYGVTVFVQTPN
LEGPGVSVREHTTVKPTEAPTEPPTPPPPPTIPPAREVCKGAKADIVFLTDASWSIGDDN
FNKVVKFIFNTVGAFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRG
GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFVV
GVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTS
PGFKMLEAYNLTEKSFASVQGVSLESGSFPSYSAYRLQKNAFVNQPTAEVHPNGLPPSYT
IILLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTD
EVKTLFYGSFHKVHIVVTSNSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKS
ATFQIQNFDIVCSPVWTSRDRCCDIPSRRDEAKCPALPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGISGAVGPPGPRGDTGPPGPQGPPGPQGPNGLSIPGEQGRQGVKGDAGEPG
LPGRSGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG
DHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMSRFNQMLNQIPNDYHSSR
NQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGIGSPGPRG
LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQG
YPEPYVPEGGAYLPEREPFVVPVEPERTADEYEDYGADQPADEQPPRARWRRARSRRPGP
NT seq
9363 nt
NT seq
+upstream
nt +downstream
nt
atgcggacccggcttccccccgcgctcgccgccctgggcgcggccctgctcctgtcttcc
atcgaggcagaagttgacccaccttcagacttgaattttaaaattatagatgaaaatact
gttcatatgtcgtgggctagaccagctgatccaattgtgggttacagaataacagtggac
cctacaactgatgggcccactaaagaatttacccttgcagctagtaccactgaaacttta
ttatcagaccttatacctgaaatagagtatgtggtgacaatcacttcctatgatgaagta
gaagaaagcgtgccagttatcggccagctaacaattcaaacaggtggtcccatgaagcca
ggggagaagaaatctggaaaaacagagatacaaaaatgctctgtcagtgcctggactgat
ttagtgtttctcgtggatggctcttggagtgtgggaagaaataatttcaagtacatttta
gactttattgctgctcttgtgtctgcttttgatattggagaggagaagacaagggttgga
gttgttcagtacagctctgaccccaggactgaattcaacttgaatcagtactaccaaagg
gacgaacttcttgctgcaattaaaaaaatcccatacaaaggtggcaacacaatgacaggg
gatgccattgattacttaattaaaaatactttcatggagtctgctggagcaagagttggc
tttcctaaagtagcgattattattacggatggcaaatctcaggatgaagtggaaattcca
gcaagagagcttcgcagtattggggttgaagttttctctttgggcattaaagctgcagat
gcaaaagaactcaaacagattgcctccacaccttcactaaatcatgttttcaacgtggcc
aactttgatgcaattgtggatattcagaatgagatcatctcccaggtgtgctcaggtgtt
gatgaacaacttggtgaactggttagtggagaagaagttattgaaccgccttcaaatttg
attgccatggaagtctcatcaaaatacattaagttaggctggagtgcatctcctagccca
gtgacaggctataaaatcctccttacaccaatgaccgctggaagccgacagcatgctctg
agtgtgggacctcagacgaccatgctcagtgttcgtgacctctcagcagatacggaatac
cagatcagtgtttctgccatgaagggactgacatccagtgaacctgtgtcaataatggag
aagactcagccaatgaaagttcaagtggaatgctcacgtggtgtggatataaaagccgat
attgtgtttttggttgatggttcctatagcattgggattgcaaactttgttaaagttaga
gcctttttagaagttcttgtaaaaagttttgagatttcaccaaacagggtacagatcagt
cttgtccaatacagccgggatcctcacaccgagttcactttgaaaaaattcacgaaagtt
gaagatataattgaagcaataaacaccttcccctacagaggaggatctacaaacactggg
aaagcaatgacttatgtcagagagaaaatatttgtgcctagcaagggttcaaggagcaac
gtgccaaaggtcatgattcttatcactgatggcaaatcttcagatgctttcagagatcct
gctataaaactaaggaattcagatgttgaaatctttgcggttggtgtgaaagatgccgtt
cgctcagaattagaagcgattgcctctcctcctgctgagactcatgtgttcacagtggaa
gattttgatgcttttcagaggatatcttttgaactcacacagtcgatctgccttagaatt
gagcaagaattagcagctataaagaaaaaagcctatgttcctccaagggatcttagtttt
tctgaggtgacttcttatagtttcaaaaccaactggtctcctgctggagaaaatgttttt
tcataccacatcacctacaaggaagctaccggggatgatgaggtcacggtggtggagcca
gcggcgagcaccagcgtcgttctcaacaacctaaagccagagaccctatactttgtcaac
gtgactgcagagtatgaggatggcttcagccttcccatcgctggagaggagaccactgca
gaagtaaaaggagcacctcgaaacctaaaggtgacagatgagaccacagatagctttaaa
attacctggactcaagctccagggagagttttaaggtaccgaattagatacagaccagtt
gctggtggcgaaagcaaagaagttaccaccccagctaatcagaggagaagaacgctggag
aacctgactccggacacaaaatatgaagtctctgttgttcctgaatatttctcgggacct
ggctctccgttgactggaaatgcagccactgaagaagttagagggaacccgagagattta
agagtttctgatcctacgacatcaagcatgagattatcttggagtggagcgcccggaaaa
gtgaaacggtatctcgtcacctacaccccagtggcaggaggggaagctcaggaggtcact
gtgaagggagacacaaccagcaccgtgctgagtggactaaacgaagggacgcggtacgcc
ttatctgtgacggccttgtatgcgtctggggctggggatgccctttttggagaagggaca
acacttgaagaacgtggttcacctcaggatttaattactaaagatatcactgacacatca
attggggcatattggacatctgctccaggaatggttcgtggttatagggtctcctggaaa
tcgctttatgatgatgttgaggctggagagaaaaatcttcctgaagacgcaattcatact
gtaatagaaaatctgcagccggagactaaatacaaaatttcggtgtttgcaacttacagc
agtggagaaggagaacctttgactggagaagccacaactgaattatcccaggattcaaaa
accttgaaagtagatgaagaaacagaaaacacaatgagagttacctggaaaccagcccct
gggaaagtcatcaactaccgtgttgtgtatcgcccacgtggaggagggagacagatggtt
gctaaagtaccacccacagtcacctcgacagtgttaaagcgacttcaaccccagaccacg
tatgacatcacagttctcccaatttataagacaggagaaggaaagcttaggcaaggatca
ggaacaacagcttctcgatttaagtcaccgagaaacctcaaaacatctgacccaaccatg
tcaagcttccgtgtgacttgggagcctgcccctggggaagtgaagggctataaggtcacc
ttccaccctacgggggatgaccgaagactgggggaattagtggttggaccgtatgacaac
acagttgttttggaggaacttagggcaggtaccacctataaagtaaatgtttttggaatg
tttgatggaggagaaagttcgccgcttgttggacaagaaatgacaaccctttctgacaca
actgtgatgccaattttatcctctgggatggagtgtctcacgagagccgaagcagacatt
gtgttgttggtggatggatcatggagcatcggccgggccaactttagaactgtgaggagt
ttcatttctcgtattgtggaagtctttgagattggccctaaaagagtacaaattgccctt
gctcagtatagtggggaccccaggacagagtggcaattaaatgctcacaaagacaagcag
agcttgttggaagcggtggccaacttaccgtacaaaggaggcaacaccctcacaggcatg
gctttgaatttcattcgtcaacagagcttcaagacccaagctggcatgaggcctcgggct
cgaaaaattggtgttctcatcactgatggaaaatcacaagatgatgtcgaggcaccttca
aagaaactcaaggacgaaggcgtggagctgtttgctgttggtattaaaaatgctgatgaa
gttgagttaaagatgattgcaacggatcccgatgatacccacgcgtacaacgtggctgat
tttgagtcactctccaggatcgtggatgacctcaccattaacttgtgtaacagtgtcaaa
ggtccaggtgacttggaagcaccttccaacctagttatttctgagcgaacccatcgttct
cttagagtgagctggacacctccttctgacagtgtggacagatataaggtggaatactac
ccagtttctggtggaaaacgtcaagaattttatgtgagccgactggagaggagcacagtc
ctgaaagatctgaagcctgagactgagtacgttgtgaacgtgtactccgtggtggaagat
gagtacagcgagcctctgaagggcacagagaaaaccttgccagtccctgtggtcagcctg
aatatttatgatgttggccctacgaccatgcgtgtgcagtggcagccagtgggaggggcg
actggctactccttgtcgtacgaacctgtcaacgccacagaaccgacaaaacccaaagag
atgcgcgtcgggccgacggtgaatgatgtgcagctgactgacctctttcccaacaccgag
tacgcggttactgtccaggccgccctgcacgacctcactagtgaacctgttactgctcgg
aaagtcaccttacctttacccagacctcgggatctgaagctcagagatgtgactcacagc
accatgaacgtcctttgggagcctgtgcctggaaaagtgcgcaaatatattgttcgctac
aaaacaccagaagaggatgtcaaagaggtagaggtggacaggtcaaggaccagcacccct
ctcagagacctcctctctcaaaccctgtacacggtcagcgtttccgcaatgtatgacgag
ggggagtctcctgcagcggctgctcaggaaaccacccgcactgtgccagccccaacaaac
ctaaggatcactgaagtatcaccagagagtttcagaggtacttgggatcacggagcgtca
gatgtgtctctctacagaataacctgggcgcctcttggaagctctgataagatggagact
atcgtaaatggagatgaaaatactttggtgtttgaaaacctgaacccgaacactctctat
gaagtttctgttactgccatttatccggatgagtcagaaagtgatgacctgattggcagt
gagcgcacaccgcgtttgatacccttaacaacacaagctccaaaaagtggcccacgaaac
cttcaggtgtacaatgcaacatcctacagcttgactgttaagtgggattctgctagcggt
cgtgtgcagaaatacagaatcacctatcagccttcgacaggggaaggcaatgagcagacg
accacaataggaggacggcagaacagtgtggtcctgcagaagctgaagcctgacactcct
tacacgattactgtgtcctccctgtatcctgacggtgaaggcggtcggatgacgggaaga
ggcaagaccaaacctctgaataccgtgaggaacttaagagtgtacgacccttctaccagc
actttgaatgtccgctgggaccatgcagagggaaatccccgtcagtacaagctcttctat
gcaccaacagcaggtggtccagaggaactggtatcactacctgggaataccaattatgcc
attctcaggagtctgcagccagataccccatacactgttacggtagttcctgtttatact
gaaggtgatggaggacgcacgtcagatactggaaggacattggtgagaggactggcaaga
aacatccaagtgtacaatcctaccccccacagcctggacgtgcgctgggaccccgcgccc
gggcccgttcagcagtaccgcatcgtgcactctcctgaggccggcacgagacccccagag
tctatggtggtgccaggaaacacccgcatggtgcgcctagagcagctgattccggacacg
ccctattctgtgaacatcgtggctctctactcagatggagaggggaatcccagcccgggc
cagggccgaacgctgccacgaggtggaccaagaaatctgagagtctttggggagacaacc
aatagcctgtctgtggcctgggatcatgccgatgggccagttcagcaatacagaatcatt
tattctcccactgtgggtgatccgattgatgaatatacaacagtcccaggcagaagaaat
aatgtaattctgcagcccctacaatctgatactccatataaaattactgttattgctgtt
tacgaagatggagatggtggccatctaataggaaatggaagaactgtgggactacttcca
cctcagaacatccacatttctgatgaatggtatacgagattcagggtatcctgggatcct
tcaccctccccggttcttggatataaaatcgtgtataagccagcgggttccaacgagccc
atggaagttttcgttggagaagtgacgtcatacacgttacacaatctcgaccccagtacc
acctacgacgtgaatgtctatgctcagtacgattctggactcagcgtccccctgacggat
caaggcaccacattatatttaaatgtgacagatctgaaaaccgaccagattggctgggat
accttctgtgttagatggtcacctcaccgggcagccacctcctacaggctgaaactcagc
cctgcagatggaacgagaggacaagaaattacagtgcgtggatcagaaaccagtcactgc
ttcactggcctttcaccagacactgactatggtgtcactgtttttgtgcagacaccaaat
ctcgagggaccaggtgtctctgtcagagaacataccaccgtaaaaccaacagaggcacct
acggagccgcccacccctcctccaccgcccaccatcccgccggcccgcgaggtatgcaaa
ggggccaaggcagatattgtatttttgactgatgcctcctggagtatcggggatgataat
tttaacaaagttgtcaaattcatcttcaataccgtgggagcatttgatgaaatcagtcct
gcaggaattcaggtctcatttgtgcagtacagtgatgaagtcaagtctgagttcaagctg
aacacgtacaacgacaaggcccttgcccttggggccctccagaatattaggtacagagga
ggaaacacaagaacaggcaaggctctcacatttatcaaggagaaggtcttgacctgggag
agcggcatgagaaagaatgtccccaaagtgctggttgtggtcacggatggtcggtcacag
gatgaagtcaagaaggcggctttggtcatccagcagtcagggttcagtgtctttgtagtt
ggtgtggctgacgttgactacaatgagcttgccaacattgccagcaaaccaagtgaaagg
catgtgttcattgtggatgactttgagtcttttgagaagattgaggacaatctcattacc
tttgtctgtgaaactgccacttcaagttgtccgctcatttacttggacggctacacctca
ccaggttttaagatgcttgaggcgtacaacctgacagagaagagctttgcttctgtacaa
ggagtctctttggagtcagggtctttccccagctactcagcttacagacttcagaagaac
gcctttgtgaatcagcctacggcagaagtacacccaaatggactccctccttcgtacaca
attatattattgttcagacttctcccagaaacccccagtgacccttttgcaatttggcaa
atcacagacagagactacaagccacaagttggagtgattgcagacccttctagcaagaca
ttatcattctttaacaaggatacaagaggtgaggtgcaaactgttacatttgatacagat
gaagtgaagacattattttatggaagttttcataaggttcatattgtagtgacttcaaac
agtgttaagatttacatcgactgctatgaaattatagaaaaagacatcaaagaagctgga
aatatcacaactgatggttatgaaattcttggaaaactacttaaaggggagaggaaatca
gccacattccaaatccagaattttgatatcgtctgcagcccagtgtggaccagtagagac
agatgctgtgatattccctctaggagagatgaggcgaaatgccctgctcttccaaatgcc
tgcacgtgcacgcaggacagtgttggacctccaggcccgccgggccctgcgggaggaccc
ggtgctaaaggtcccagaggtgaaagaggtatcagtggggcagttgggccccccggccct
cgtggagatacaggtcctccaggcccccagggtccaccaggcccccagggacccaacgga
ctgtctattccgggagaacaaggtcgccaaggggtgaaaggggatgctggagagccggga
cttccaggccgatctggaaccccgggattacctggcccacctggtccaatgggaccccca
ggagatagaggctttactggaaaagatggtgcaatgggacccaggggtccccctgggcca
ccgggcagccccggctctccaggagtcacgggaccaagtgggaagccaggcaaacccgga
gaccacggcagaccaggtccatctggactgaaaggagagaaaggcgatagaggagacatt
gcttctcagaacatgatgcgagcagttgcaagacaagtctgtgaacaattgataagtggc
cagatgagcagattcaatcagatgctgaatcagattccaaatgattaccactccagtcgc
aaccagccgggcccgccgggtcccccaggcccccctggcagtgcgggagccagaggagaa
ccaggacctggggggcggccaggcttccccggcacaccagggatgcagggccccccgggt
gaacgaggtttgccaggagagaaaggcgagaggggtattggatctccaggaccgcgaggg
ctgcctggccccccaggtccacaaggagaatccagaacaggtccaccagggtctacaggt
tcaagaggtccccctgggccccctggtcgtcctggaaactcaggtatccgaggcccccca
ggtcctcctgggtactgtgactcctcccagtgtgccagcatcccatacaacgggcaaggc
tatccagagccttacgtgcccgagggcggggcctacctgcctgagcgcgagcccttcgtc
gtgccagtggagcctgagcggacggcggacgagtacgaggactacggcgccgaccagcca
gccgacgagcagcctccccgcgcgcgctggcggcgcgccaggtcccgccgccccgggcct
tga
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integrated database retrieval system
