Equus caballus (horse): 100049009
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Entry
100049009 CDS
T01058
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1 isoform 2
KO
K14284
nuclear RNA export factor
Organism
ecb
Equus caballus (horse)
Pathway
ecb03008
Ribosome biogenesis in eukaryotes
ecb03013
Nucleocytoplasmic transport
ecb03015
mRNA surveillance pathway
ecb05014
Amyotrophic lateral sclerosis
ecb05164
Influenza A
ecb05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100049009 (NXF1)
03015 mRNA surveillance pathway
100049009 (NXF1)
03008 Ribosome biogenesis in eukaryotes
100049009 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
100049009 (NXF1)
05168 Herpes simplex virus 1 infection
100049009 (NXF1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100049009 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100049009 (NXF1)
03009 Ribosome biogenesis [BR:
ecb03009
]
100049009 (NXF1)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100049009 (NXF1)
mRNA cycle factors
Stress granule specific factors
100049009 (NXF1)
Ribosome biogenesis [BR:
ecb03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
100049009 (NXF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
RRM_NXF1-2
Citrulline_exp
LRR_9
Motif
Other DBs
NCBI-GeneID:
100049009
NCBI-ProteinID:
NP_001091076
Ensembl:
ENSECAG00000001426
VGNC:
20984
UniProt:
F6S7D4
LinkDB
All DBs
Position
12:complement(26573159..26583173)
Genome browser
AA seq
559 aa
AA seq
DB search
MSDAQDVPRVRYNPYAARPNRRGDGWHDRDRIHITVRRDRPPQERGGAGTSQDGTAKNWF
KITIPYGRKYDKAWLLSVIQSKCSVPFTPVEFHYENTRAQFFVEDASTASALKAVNYKIL
DQENRRISIIINASVPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA
QNIDVVLNRKSCMVATLRIIEENIPELLSLNLSNNKLYRLDDLSSIVQKAPNLKILNLSG
NELKSERELDKVKGLKLEELWLDGNPLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPI
AFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAIYDSGDRQRLLDAYHDGACCSLSI
PFIPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFV
VDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPASNSGLCIVNDELFVRNAS
PEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA
QAFTHLKAKGEIPEVAFMK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgcccaggatgttccccgagtaagatacaacccctatgctgcccgacccaac
cgtcggggtgatggttggcatgatcgcgaccgaattcatattactgtgcggagagacaga
cctcctcaagaaagaggaggggctggcaccagccaggatgggacggcaaagaactggttt
aagattacaattccttatggcagaaaatatgacaaggcgtggctcctaagtgtgattcag
agcaagtgcagtgtccctttcacccctgttgagtttcactatgaaaacacacgggcccag
tttttcgttgaggatgccagtaccgcctctgcattgaaggctgtcaactataagattttg
gatcaggagaaccgaaggatatctatcatcatcaacgcctctgttccgccccattctgtg
cagaatgagctgaaaccagaacaagtagagcagctaaagctgatcatgagcaaacgatac
gatggctcccaacaagcacttgacctcaaaggcctccgttcagacccagatttggtggcc
cagaacattgatgttgtcctgaatcgtaaaagctgcatggtggctaccctgcgaatcatt
gaagagaacatccccgagctgttgtccctgaacttgagcaacaataagctatacaggttg
gatgacctgtccagcattgtgcagaaagcacccaacctaaagatcctaaacctctctgga
aatgagttgaagtctgagagggagttggacaaggtaaaaggcctgaagctagaagagctg
tggcttgacggaaaccccctgtgtgacaccttccgagaccagtccacttatatcagcgcc
attcgtgaacgatttcccaaattactacgtctggatggccatgagttacccccgccaatt
gcctttgatgttgaagcccccacgatgttaccaccctgcaagggaagctattttggaaca
gagaccctgaaaaatctggtcctgcacttcttgcagcagtactatgcaatttatgactct
ggagaccggcagcggctcctggatgcctatcatgatggagcctgctgctccctgagcatt
cctttcatcccccagaaccctgcccgaagcaacttggccgagtatttcaaggacagcagg
aatgtgaagaagcttaaagaccctaccctgcggttccggctgctgaaacacacacgtctc
aacgttgttgccttcctcaatgagttgcccaaaactcagcatgacgtcaattctttcgtg
gtagacataagcgctcagacaagcacgttgctgtgtttttctgtcaatggggtcttcaag
gaagtggatggaaagtctcgggattctttgcgagctttcacccggacgttcgttgctgtt
cctgccagcaattcagggctgtgcatcgtaaacgacgagctgtttgtgcggaatgccagc
cccgaggagatccaaagagcctttgccatgcctgcacccacaccgtcctccagcccagtg
cccaccctctccccagagcagcaggaaatgctgcaggcattctcgacccagtctggcatg
aacctcgagtggtcccagaagtgccttcaggacaacaactgggactacaccagatctgcc
caggccttcactcatctcaaggccaagggcgagatcccagaagtggcgttcatgaagtga
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