Equus caballus (horse): 100049850
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Entry
100049850 CDS
T01058
Symbol
TPR
Name
(RefSeq) nucleoprotein TPR isoform X1
KO
K09291
nucleoprotein TPR
Organism
ecb
Equus caballus (horse)
Pathway
ecb03013
Nucleocytoplasmic transport
ecb05014
Amyotrophic lateral sclerosis
ecb05200
Pathways in cancer
ecb05216
Thyroid cancer
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100049850 (TPR)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100049850 (TPR)
09162 Cancer: specific types
05216 Thyroid cancer
100049850 (TPR)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100049850 (TPR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100049850 (TPR)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100049850 (TPR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Seryl_tRNA_N
DUF5082
Uso1_p115_C
Baculo_PEP_C
DUF1192
Imm70
Motif
Other DBs
NCBI-GeneID:
100049850
NCBI-ProteinID:
XP_023496485
Ensembl:
ENSECAG00000020724
VGNC:
50899
LinkDB
All DBs
Position
5:complement(20198947..20254072)
Genome browser
AA seq
2443 aa
AA seq
DB search
MPSSGSVSRSRQRGRPMASRSFDGSRRGSLRRAGAREPVSEATEAAAQASGSSWSSPFFS
VSAPSAAAAAAPGPSDMAAVLQQVLERAELNKLPKSVQNKLEKFLADQQSEIDGLKGRHE
KFKVESEQQYFEIEKRLSHSQERLVNETRECQNLRLELEKLNNQLKALTEKNKELEVAQD
RNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNATKGDLQL
KLDELQASDVSVKYREKRLEQEKELLHNQNTWLNTELKTKTDELLALGREKGNEILELKC
NLENKKEEVSRMEEQMNGLKTSNENLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIK
LSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEKSKEQMEKEMLE
KIGKLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVE
TQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKE
IQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSA
DISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLE
NALTELEQLRESRQHQMQLVDSIVRQRDMYRILLSQITGVNIPLQASSLDDISLVSTPKR
SSTSQTVSTPAPVPVIESAEAIEAKAALKQLQEIFENYKKEKADNEKIQNEQLEKFQEQV
TDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMT
QDLRGASEKLAVAEVRADNLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQG
ILERSETETKQRLSNQIEKLENEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTET
NLHLNTKELLKNAQKEIATLKQHLSNMEVQLASQSSQRSGKGQPNSKEDVDDLLSQLRQT
EEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQL
EKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLTNVQNEVQEALQRASTALSNEQQA
RRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQL
LECKASWEERERMLKDEVSKCVSRCEDLEKQNRLLHDQIEKLSDKVVASMKEGVQGPLNI
SLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNV
EREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDI
LPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVH
TKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKESIQKDLDAKIIDI
QEKVKTITQVKKIGRRYKTQYEELKAQQDKAMETSAQSSGDHQEQHVSVQEMQELKETLN
QAETKSKSLENQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQ
QITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRMTALKS
QYEGRISRLERELREHQERHLEQRDEPQEPTNKVPEQQRQITLKTTPASGERGIASTSDP
PTANIKPTPVVSTPSKVTAAAMAGNKSTPRASIRPMVTPATVTNPTTTPTATVMPTTQVE
SQEAMQSEGPVEHVPVFGSTSGSVRSTSPNVQPSIPQPILTVQQQTQATAFVQPTQQSHP
QIEPANQELSPNIVEVVQSSPVERPSTSTAVFGTVSATPSSSLPKRTREEEEDSTIEASD
QVSDDTVEMPLPKKLKSVTPVGTEEEVMAEESTDGEVETQVYNQDSQDSIGEGVTQGDYT
PMEDSEETSQSLQIDLGPLQSDQQTTTSSQDGQGKGDDVIVIDSDDEEDDDDDNDGEHED
YEEDEEEDDDDEDDTGMGDEGEDSNEGTGSADGNDGYEADDAEGGDGTDPGTETEESMGG
GESNQRAADSQNSGEGNTGTAESSFSQEIAREQQPSSASERQTPRAPQSPRRPPHPLPPR
LTIHAPPQELGPPVQRIQMTRRQSVGRGLQLTPGIGGMQQHFFDDEDRTVPSTPTLVVPH
RTDGFAEAIHSPQVAGVPRFRFGPPEDMPQTSSSHSDLGQLASQGELSLGLGMYETPLFL
AHEEESGGRSVPTTPLQVAAPVTVFTESTTSDASEHASQSVPMVTTSTGTLSTTNETATG
DDGDEVFVEAESEGISSEAGLEIDSQQEEEPVQASDESDLPSTSQDPPSSSSVDTSSSQP
KPFRRVRLQTTLRQGVRGRQFNRQRGVSHAMGGRGGINRGNIN
NT seq
7332 nt
NT seq
+upstream
nt +downstream
nt
atgccctctagtggctcagtgtctagaagccgccaaagaggacgccccatggcatcccgg
agctttgacgggtcccgtcgcgggagtctccggcgggcaggcgcgcgggagcccgtgagc
gaggccacagaggcggccgcccaggcctctgggtcctcctggtcttcgcctttcttctcg
gtttctgctccgtcggccgctgccgccgcggcccccggccccagcgacatggcggcggtg
ttgcagcaagtgctggagcgcgcggaactgaacaagctgccgaagtccgtccagaacaaa
ctcgagaagttccttgctgaccagcagtccgagatcgatggcctcaaggggcggcacgag
aagtttaaggtagagagcgaacaacagtactttgagatagagaagaggctgtcccacagt
caggagagacttgtgaatgagacccgggagtgccaaaacttgcggcttgagctggagaag
ctcaacaatcaactgaaggcactaactgagaaaaacaaagaacttgaagttgctcaggat
cgcaatattgccattcagagccagtttacaaggacaaaggaagaattggaagctgagaaa
agagacttaattagaaccaatgagagactctctcaagaacttgaatatttaacagaggat
gttaaacgtctaaatgaaaaacttaaagaaagcaatgcaacaaagggcgatcttcagtta
aaactggatgagcttcaagcttctgatgtttctgttaagtatcgagaaaaacgcttagag
caagaaaaggagttgttacataatcagaatacatggctgaatacagagttgaaaactaaa
actgatgaacttctggctcttggcagagaaaaaggaaatgagattctagagcttaaatgt
aatcttgaaaacaaaaaagaggaggtttctagaatggaagaacagatgaatggcttgaaa
acgtcaaatgagaatcttcaaaagcatgtagaggatctgttgaccaaactgaaagaggcc
aaggaacagcaggccagtatggaggagaaattccacaatgaattaaatgctcacataaaa
ctctctaacctgtacaagagtgctgctgatgactcagaggcaaagagcaatgaactgacc
agagcagtcgatgaactacacaagcttttgaaagaagctggagaagccaataaagcaata
caagatcatcttctagaggtggagaaatctaaagagcaaatggaaaaagaaatgctagag
aaaatagggaaattggagaaggaattagagaatgcaaatgacctactttctgccacaaaa
cgtaaaggagccatattatctgaagaagagcttgcagccatgtctcctactgcagcagcc
gtagctaagatagtgaaacctggcatgaaattaactgagctgtataatgcttatgtggaa
actcaggatcagttgctgttggagaaactagaaaacaaaagaattaataagtatctggat
gaaatagtgaaagaagttgaagccaaagcaccaattttgaaacgccagcgtgaggagtat
gagcgtgcacaaaaagctgtggcaagtttatctgttaagcttgaacaagctatgaaggag
attcagcgattgcaggaggacactgataaagccaacaaacattcatctgtgctcgaaaga
gacaatcaaagaatggaaatacaaataaaagatctttcacaacagattagggtgcttctg
atggaacttgaagaagcaaggggtaaccatgtaattcgtgatgaggaagtaagctctgct
gatataagtagctcatctgaagtgatatcacagcatctagtatcttacagaaatattgaa
gagcttcaacaacaaaatcaacgtctcttagtggctctcagggaactaggggaaaccaga
gaaagagaagaacaagaaacaacttcatccaaaatcactgagcttcagctcaaacttgag
aatgccctcactgaattggagcaactccgtgagtcacgacaacatcagatgcagcttgtt
gattccatagttcgtcagcgtgatatgtaccgtattttattgtcacaaataacaggagtt
aacattcctttacaagcttccagtttagatgatatttctcttgtgtcaactccaaaacgt
tcaagtacatcacagactgtttctactcctgccccggtacctgtaatcgagtcagcagag
gctatagaagccaaggctgcccttaaacagttgcaggaaatttttgagaactacaaaaaa
gaaaaggcggataatgaaaaaatacaaaatgagcagcttgagaaatttcaggagcaagtt
acagatttgcgatcacaaaacaccaaaatttctacccagctagattttgcttctaaacgt
tatgaaatgttacaagataatgttgaaggatatcgtcgagaaataacatccctacatgag
agaaaccagaaactcactgcaacaactcaaaagcaggagcagatcataaatacgatgaca
caagatttgagaggagcaagtgaaaagctagctgttgcagaagtaagagcggataatttg
aaaaaggaaaaggaaatgcttaaattgtcagaagtccgtctttctcaacagagagaatct
ttgttagctgaacaaagagggcaaaatttgctgctaactaatctgcaaacaattcagggg
atattagagcgatctgaaacagaaaccaaacaaaggctaagtaaccagattgaaaaactg
gaaaatgaaatatctcatctaaagaagaagttggaaaatgaggtggaacagaggcacaca
cttactagaaatctagatgttcaactgttagatacaaagagacaactggacactgagaca
aatcttcatcttaacacaaaagaactgttaaaaaatgctcaaaaggaaattgctacattg
aaacagcacctcagtaatatggaagtacagcttgcttctcagtcctcacagagatctggt
aaaggtcagcctaacagcaaagaagatgtggatgatcttctgagtcagctaaggcagaca
gaagagcaggtgaatgatttaaaggagagactcaaaacaagtactagtaatgtggaacag
tatcgagcaatggttactagtttagaagaatccctcaacaaggaaaaacaggtgacagaa
gaagtacgtaagaatattgaagttcgtttaaaagagtcagctgagtttcagacacagttg
gaaaagaagttgatggaagtagagaaggaaaaacaggaacttcaggatgataagagaaaa
gccatagagagcatggaacaacagttatctgagttaaagaaaacacttactaatgttcag
aatgaagtacaggaagctcttcagagagcaagcacagctttgagtaacgagcagcaagcc
agacgcgactgtcaggaacaggctaaaatagctgtggaagctcagaataagtatgagaga
gaattgatgctacatgctgctgatgttgaagctctacaagccgccaaggaacaggtttcc
aaaatggcatcagtccgtcagcatttagaagaaacaacccagaaagcagaatcacagttg
ttggagtgtaaagcatcttgggaggaaagagagagaatgttaaaggatgaagtttccaag
tgtgtgtctcgctgtgaagatctagaaaaacaaaacagattacttcatgatcagattgaa
aaattaagtgacaaagtcgttgcctctatgaaggagggtgtgcaaggtcccttgaatatc
tctctcagtgaagaaggaaaatcccaagaacaaattttagaaattctcagatttatacga
cgagaaaaagaaattgctgaaactaggtttgaggtggctcaggttgagagtctgcgttat
cgacaaagggttgaacttttagaaagagagctgcaggaacttcaggatagtctaaatgtg
gaaagggagaaagtccaggtaactgcaaaaacaatggcccagcatgaagaactgatgaag
aaaactgaaacaatgaacgtagttatggagaccaataagatgctaagagaagaaaaggag
aggctagaacaggatctacagcagatgcaagcaaaggtgaggaaactggagttagatatt
ttacccttacaagaagccaatgctgagctgagtgaaaaaagcggtatgttacaagcagag
aagaagttactagaagaagatgtcaaacgctggaaagcacgtaaccagcatctagtaagt
caacagaaagatccagatacagaagaatatcggaagctcctttctgaaaaggaagttcat
actaaacgtattcaacagttgactgaagaaattgggagacttaaagctgaaattgcaaga
tcaaatgcatctttgactaacaaccagaacttaatccagagtctaaaggaagatttaaat
aaagtaagaactgaaaaagaaagcatccagaaggacttagatgccaaaataattgacatc
caagaaaaagtcaaaactattactcaagtcaagaaaattggacgtaggtacaagactcaa
tatgaagaacttaaagcacagcaggataaggcaatggagacctcagctcagtcttctggc
gaccatcaggaacagcatgtctcagtccaagaaatgcaggagctcaaagaaacccttaac
caagctgaaacaaagtcaaaatcactcgagaatcaagtagagaatttacaaaagacgtta
tctgaaaaagagacggaagcaagaaatctccaggaacagactgtgcagcttcaatccgaa
ctttcacgacttcgtcaggatcttcaagatagaaccacgcaggaggagcagctccgacag
cagataactgaaaaggaagaaaaaacaagaaaggctattgtagcagcaaaatcaaaaatt
gcacatttagctggtgtaaaagatcagctaactaaagaaaatgaggagcttaaacaaagg
aatggagccttagatcaacagaaagatgaattagatgttcgtatgactgctcttaagtcc
caatatgaaggtcgaattagtcgcttggaaagagaactaagggagcatcaagagagacac
cttgagcagagagatgagcctcaagaacctactaacaaggtcccagaacagcagagacag
atcacattgaaaacaactccagcttctggtgaaagaggaattgccagcacatcagaccca
ccaacagccaatatcaagccaactcctgttgtgtctactccaagtaaagtgaccgctgca
gctatggctgggaataagtcaacacccagggctagtatccgcccaatggttacacctgca
acagttacaaatcctactactaccccaacagctacggtgatgcccactacacaagtggaa
tcacaagaagctatgcaatcagaagggcctgtggaacatgttccagtgtttggaagcaca
agtggatctgttcgttctaccagtcctaacgtccaaccttctatccctcaacccatttta
actgttcagcaacaaacacaggctacggcttttgtgcaacccactcaacagagtcatcct
cagattgagcctgcaaatcaagagctatccccaaacatagtagaagtggttcagagttcg
ccagttgagcggccttccacttccacagcagtatttggcactgtttcagctaccccaagt
tcttctctgccaaaacgtacgcgtgaagaggaagaggatagcaccatagaagcgtcggac
caggtctctgatgatacagtggaaatgccgcttccaaagaaattgaaaagtgttacgcct
gttggaactgaggaagaagttatggcagaagaaagtactgatggagaggtagagactcaa
gtatacaaccaagattctcaggattccattggagaaggagtcacccagggagattatact
ccaatggaagacagtgaagaaacctcccaatctttacaaatagaccttggaccccttcaa
tcagatcagcaaaccacaacttcatcccaagatggtcaaggcaaaggagatgatgtcatt
gtaatcgacagtgatgatgaagaagatgatgatgatgacaatgatggagagcatgaggat
tatgaagaagatgaagaagaagatgatgatgatgaagatgacacagggatgggagatgag
ggtgaagatagtaatgaaggcactggtagtgcagatggcaatgatggatatgaagctgat
gatgctgagggcggtgatgggactgatccaggtacagagacagaagaaagtatgggtgga
ggtgaaagtaatcagagagctgctgattcccaaaacagtggtgaaggaaatacaggtact
gcagagtcatctttttcccaggagattgctagagaacaacagccatcatcagcatctgaa
agacagacccctcgagcacctcagtcaccgagacgcccaccacacccacttcccccaaga
ctgaccattcatgctccacctcaagagttgggaccaccagttcagagaattcagatgact
cggaggcagtctgtaggacgtgggcttcagttgactccaggaataggtggcatgcagcag
catttttttgatgatgaagacagaacagttccaagtaccccaactcttgtggtgccacat
cgtactgatggatttgctgaggcaattcattccccacaagttgctggtgttcctagattc
cggtttgggccacctgaagatatgccacaaacaagttcaagtcactctgatcttggccag
cttgcttctcaaggagaattgtctttaggtttaggaatgtatgaaacacccctcttccta
gctcatgaagaagagtctggtggccgaagtgttcccactactcctctgcaagtagcagcc
ccagtaaccgtatttactgagagtaccacctctgatgcttcagagcatgcctctcagtct
gttccaatggtgacaacgtccactggcactttatccacaacaaatgaaacagcaacaggt
gatgatggagatgaagtatttgtggaggcagaatctgaaggtattagttcagaagcaggc
ctagaaattgatagccagcaggaagaagaacctgttcaggcatctgatgagtcagacctt
ccttccaccagccaggatcctccttctagttcttctgtagatactagcagtagtcaacca
aagcctttcagacgagtaagacttcagacaacattgagacaaggtgtccgtggtcgtcaa
tttaacagacagagaggtgtgagccatgcaatgggagggagaggaggaataaatagagga
aacattaattaa
DBGET
integrated database retrieval system