Equus caballus (horse): 100049922
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Entry
100049922 CDS
T01058
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X2
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04820
Cytoskeleton in muscle cells
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100049922 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100049922 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecb00536
]
100049922 (COL11A1)
Glycosaminoglycan binding proteins [BR:
ecb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100049922 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100049922
NCBI-ProteinID:
XP_001918150
Ensembl:
ENSECAG00000021205
VGNC:
16721
LinkDB
All DBs
Position
5:60342324..60539427
Genome browser
AA seq
1806 aa
AA seq
DB search
MERWSSRWKTKRWLWDFTITTLALTFLFQAREVRGAAPVDVLKALDFHNSPEGITKTTGF
CTNRKNSQGSDTAYRVSKQAQLSAPTKQLFSGGTFPEDFSILFTVKPKKGVQSFLLSIYN
EHGIQQVGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLERSERSIVDTNGITVFGTRILDEEVFEGDIQQLLIIGDPKAAYDYCEHYS
PDCDSSAPKAAQAQEPQIDEYAPEDIIEYDYEYGEAEYKEAESVTEIPTVTEETIAQTEA
NIVDDFQEYNYGTVESYQTEAPRRVSGPNEPNPVEEVFTEEYLTGEDYDSQRKNAEDTLY
ENKGIDGRDSDLPVDGDLGEYDFYEYKEYEDKPTGPTNEEFGPGVPAETDITETSINGHG
AYGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGRPGLP
GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP
GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDR
GFDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTP
GPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP
GLGGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEK
GEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP
GLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKP
GPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT
GPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKD
GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ
GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSK
GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ
GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEA
GNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP
GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK
GEAGAEGPAGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP
GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPP
GPPGLPGPQGPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTES
MQADAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDG
EYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDRKSEGVRISSWPKEKPGSWFSEFKRGKL
LSYLDVEGNSINMVQMTFLKLLTASARQNFTYNCHQSVAWYDVSSGSYDKALRFLGSNDE
EMSYDNNPYIKALYDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVG
PVCFLG
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtggtcctctaggtggaaaacgaaacggtggctctgggatttcaccataaca
accctcgcactgactttcctcttccaggctagagaggtcagaggagctgctccagttgat
gtactaaaagctctagattttcacaattctccagagggaataacaaaaacaacgggcttt
tgcacaaacagaaagaattcacaaggttcagatactgcttacagagtttcaaagcaagcg
caactcagtgccccaacaaaacagttgttttcaggaggaacttttccagaagatttttca
atattatttacagtaaaacccaaaaaaggagttcagtctttccttttatctatatataat
gagcacggtattcagcaagtcggtgttgaggttgggagatcgcctgttttcctgtttgaa
gaccacactggaaagcccgccccagaagactatcccctcttcagaactgttaacattgct
gatgggaagtggcatcgggtagcaatcagcgtggaaaagaaaactgtgacaatgatagtt
gattgtaagaagaaaaccacaaaaccacttgagagaagtgagcgatcaatcgttgacacc
aatggaatcacagtttttggaacgcggattttggacgaagaagtttttgagggggacatc
cagcagttgttgatcataggtgaccccaaagcagcgtacgactactgtgagcattacagc
ccagactgtgactcgtcagcgcccaaggccgctcaggctcaggaacctcagatcgatgag
tatgcacctgaggatataatcgaatatgactatgagtatggggaagcagaatataaggaa
gctgaaagtgtaacagagatacccactgtaactgaggagacaatagcacaaactgaggca
aatattgttgatgatttccaagaatacaactatggaactgtagaaagctaccagacagaa
gctcccaggcgtgtatctggaccaaatgagccaaatccagttgaagaagtatttactgaa
gaatatctaactggagaggattatgactcccagaggaaaaatgccgaggatacactatat
gaaaataaaggaatagacggcagggactctgatcttccggtagatggagatttaggcgaa
tatgatttttatgaatataaagaatatgaagataaaccaacaggccccactaatgaagaa
tttggtccaggtgttccagcagaaactgatatcacagaaacaagcataaatggccatggt
gcatatggagaaaaaggacagaaaggggaaccagcagtagttgaacctggaatgcttatt
gaaggaccaccagggccagcaggacctgcgggtcttatgggtcctccaggtctacaaggc
cccactggaccccctggtgaccctggcgagaggggtcccccaggacgtcctggcttacca
ggggctgatggtttacctggtcctcctggtaccatgctaatgttaccgtttcgttatggt
ggcgatggttccaaaggaccaaccatctctgctcaggaagctcaggctcaggccattctt
cagcaggctcggattgctctgagaggtccacctggcccaatgggcctaactggaagacca
ggtcctgtgggcgggcctggttcatctggagccaaaggtgagagtggtgatccaggtcct
cagggccctcgtggtgtccaaggtccgcctggtccaacaggaaaacctggaaaaaggggt
cgtccaggtgctgatggaggaagaggaatgccaggagaacctggggcgaagggggatcga
ggatttgatggacttccaggtcttccaggtgacaaaggtcacaggggtgaacgaggtccc
caaggtcctcctggtcctcctggtgaagatggaatgaggggagaagatggagaaattgga
ccaaggggtcttccaggtgaagctggtccacgaggcttgctgggaccaaggggaactcca
ggacctacagggcagcctggtattgccggtgtagatggccccccgggaccaaaagggaac
atgggtccccaaggggagcctggacctccagggcagcaagggaatccaggacctcagggt
cttcctggtccacaaggtccaattggtcctcctggtgaaaaaggaccacaaggaaaacca
gggcttgggggacttcctggtgctgatggccctcctggtcatcctggaaaagaaggccag
tctggagaaaaaggtgctctgggtcctcctggtccacagggtcctattggctaccctggt
ccccgaggagtaaagggagcagatggtgttagaggtctcaagggctctaaaggtgaaaag
ggtgaagacggttttccaggattcaaaggtgacatgggtcttaaaggtgatagaggagaa
gttggtcaagtaggtcccagaggagaagacggccccgaaggccccaaaggtcgagcaggt
ccaactggagaccctggtccttctggtcaagcaggagagaaggggaaacttggtgttcca
ggattaccaggatatccaggaagacaaggtccaaagggttccactggatttcctgggttt
ccaggtgccaatggagagaaaggtgcacggggtgtagctggcaaaccaggccctcggggt
cagcgtggtccaacgggtcctcgaggttcaagaggtgcaagaggtcccactgggaaacct
ggtccaaagggcacttcaggtggtgatggccctcctggccctcctggtgaaagaggccct
caaggacctcagggtccagttggattccctggaccaaaaggccctcctggaccacctggc
aaggatggtctgcctggacaccctgggcaacgtggagagactggattccaaggcaagact
ggccctcctggaccaggaggtgttgttggaccacagggaccaactggtgagactggccca
ataggtgaacgtggacatcctggccctcctggacctcctggtgagcaaggtcttcctggt
gctgcaggaaaagaaggtgcaaagggtgacccaggtcctcaaggtatctcagggaaagat
ggaccggcaggactacgtggtttcccaggtgaaagaggtcttcctggagctcagggtgca
cctggactgaaaggaggggaaggtccccagggcccaccaggtccagttggctcaccggga
gaacgtggatcagcaggtactgctggcccaattggtttgccggggcgtccaggaccccag
ggtcctcccggtccagctggagagaaaggtgctcctggagaaaaaggtccccaaggcccc
gcggggagagatggagtacaaggccctgtgggtctcccagggcctgcagggcctgccggc
tcccctggagaagatggagacaagggtgaaattggtgaaccaggacaaaagggcagcaaa
ggtgacaaaggagaaaatggtcctcctggtcccccaggtcttcaaggtccagttggtgcc
cctggaattgctggaggtgatggtgagccaggtccccgaggtcaacaggggatgtttgga
cagaaaggtgatgagggtgcaaggggtttcccaggaccgcctggtcccataggtcttcag
ggtctgccaggcccacctggtgaaaaaggtgaaaatggagatgttggtcccatgggtcca
cctggtcctccaggcccaagaggccctcaaggccccaatggagctgatggaccacaagga
cccccaggatccattggttcagttggtggtgttggagaaaagggtgagcctggagaagca
gggaacccagggcctcctggggaagcaggcacaggcggtcccaaaggagaaagaggagag
aaaggagaagctggtccacccggtgctgctggacctcctggtgctaagggaccaccaggt
gatgatggccctaagggtaacccgggtcctgttggttttcctggagatcctggtccccct
ggggaacctggccctgcaggtcaagatggtgttggtggtgacaagggtgaagatggagat
cccggtcaaccgggtcctcctggtccatctggtgaggctggcccaccaggtcctcctgga
aaaagaggtcctcctggagctgcaggggcagagggaagacaaggagaaaaaggtgctaag
ggagaagcaggtgcagaaggtcccgccggaaaaacgggcccagttggccctcagggacct
gctggaaagcctggtccagagggtcttcgaggcatccctggccctgtgggagagcaaggt
ctccctggagccgcgggccaagacgggccgcctggtcccatgggacctcctggcttacct
ggtctcaaaggtgaccccggctctaagggtgagaagggacatcctggtttaattggcctg
attggtcctccaggagaacaaggtgaaaagggtgacagaggactccctggaactcaggga
tctccaggagcaaagggagatggaggaattccaggtcctgctggtcccataggaccacct
ggtcctccaggcttaccgggtcctcaaggtccaaagggtaccaaagggtctacaggacct
gctggccagaagggtgacagtggtcttccagggcctcctgggcctccaggtccccctggt
gaagtcattcagcctttaccaatcttgtcacccaaaaaaacaagaagacatactgaaagc
atgcaagcagacgcaggtgataatattcttgattactcggatggaatggaggaaatattt
ggttccctcaattccctgaaacaagacatcgagcatatgaagtttccaatgggtactcag
accaacccagcccgaacttgcaaagacctgcaactaagccatcctgatttcccagatggt
gaatattggattgatcctaaccaaggttgctcaggagattccttcaaagtttactgtaat
ttcacgtctggtggcgagacttgcatttatccagacagaaaatctgagggagtgagaatt
tcatcatggccaaaggagaaaccaggaagctggtttagtgaatttaagagaggaaaactg
ctttcatatttagatgttgaaggcaattccattaacatggtgcaaatgacattcctgaaa
ctgctgactgcctctgctcggcaaaatttcacctacaactgtcaccagtcagtagcctgg
tatgatgtgtcatcaggaagctacgacaaagcacttcgattcctgggatcaaatgatgag
gagatgtcctatgacaataacccttacatcaaagcgctgtacgatggctgtgcgtccaga
aaaggctatgaaaagactgtgattgaaatcaacacaccgaaaattgatcaagtacctatt
gttgatgtaatgatcaatgactttggtgatcagaatcagaagtttggatttgaagttggt
cctgtttgttttcttggctaa
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integrated database retrieval system
