Equus caballus (horse): 100050094
Help
Entry
100050094 CDS
T01058
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ecb
Equus caballus (horse)
Pathway
ecb03008
Ribosome biogenesis in eukaryotes
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100050094 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
100050094 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecb03021
]
100050094 (XRN2)
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100050094 (XRN2)
03009 Ribosome biogenesis [BR:
ecb03009
]
100050094 (XRN2)
03016 Transfer RNA biogenesis [BR:
ecb03016
]
100050094 (XRN2)
Transcription machinery [BR:
ecb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100050094 (XRN2)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
100050094 (XRN2)
Ribosome biogenesis [BR:
ecb03009
]
Eukaryotic type
Pre-60S particles
RNases
100050094 (XRN2)
Transfer RNA biogenesis [BR:
ecb03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100050094 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
100050094
NCBI-ProteinID:
XP_003363975
Ensembl:
ENSECAG00000018988
VGNC:
25086
LinkDB
All DBs
Position
22:complement(3923223..3997271)
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPGGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSVSPNASF
TSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFIVELYQTGSTEPVGVPPELCHGIQG
KFSLDEEAILPDQIVCSPVPMLRDLAQNTAISVNFKDPQFAEDYIFKAVMLPGARKPAPV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGVYSSAAPPPAA
YQGSLYRPLLRGHAHIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQTQ
NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggctttctttcgctggctcagtcgcaagtacccgtccatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattcctgttgatgccagtaaa
cctaatccaaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccat
ccctgtactcatcctgaagacaaaccagcaccaaaaaatgaggatgaaatgatggttgca
atttttgaatacattgacagacttttcaatatagtgagaccaagacgacttctctacatg
gcaatagatggagtggcaccacgtgctaaaatgaaccagcagcgttcgaggagattcaga
gcatcaaaagaaggaatggaagcagcagtagagaaacagcgagtcagagaagaaatactg
gcaaaaggtggctttcttcctcctgaagaaataaaagaaagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgctagtgct
cctggtgaaggagaacataaaattatggattacattagaagacaaagagcccagcctaac
catgacccaaacactcaccattgcttatgtggagcagacgctgatctcattatgctcggc
cttgctacacatgaacccaactttaccattattagagaagaattcaaaccaaacaaaccc
aaaccatgtggtctttgtaatcagtttggacatgaggtcaaggactgtgaaggtttgcca
agagaaaagaagggaaagcatgatgaacttgcggatagtcttccttgtgcagaaggagag
tttatcttccttcgtctcaatgttcttcgtgagtatttggagagagagctcaccatggcc
agcctaccgttcacatttgatgtcgagaggagcattgatgactgggtcttcatgtgcttt
tttgtgggcaatgacttccttcctcacctgccgtcattagagattagggaaggtgcaatt
gaccgtttggttaacatatacaaaaatgtggttcacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcaaccagctttcaccccgggtggaatattaacccct
catgccttgggttcaagaaattcaccaggttctcaagtagccagtaatccgagacaagca
gcctatgaaatgcggatgcagaataactctagtccttcagtatctcctaatgcgagtttc
acttctgatggctccccgtctccaataggaggaattaagcgaaaagcagaagacagtgac
agtgaacctgagccagaggataacgtcaggctctgggaagctggttggaagcagcggtac
tacaagaacaaatttgacgttgatgcagctgatgagaaattccgtcgtaaagttgtacag
tcttacgttgaagggctctgctgggttcttcggtattattaccagggctgtgcttcctgg
aagtggtactatccctttcattatgcaccatttgcttcagactttgaaggtattgcagac
atgccttctgattttgagaagggtactaaaccgtttaaaccactggaacagcttatggga
gtttttccagctgcaagtggtaactttctacctccatcatggcggaagctcatgagtgat
cctgattctagtataattgacttctaccctgaagattttgccattgatttaaatgggaag
aaatatgcctggcaaggtgttgctctcctgccgttcgtggatgagcggaggctgcgagct
gccctagaagaggtgtacccagacctcactccagaagagaccagaagaaacagtcttgga
ggtgacgtcttatttgtggggaaacatcacccactccacgacttcattgtagagctgtac
cagacaggttccacagagccagtgggtgtaccccctgaactatgtcatgggattcaagga
aagttttctttggatgaagaagccattcttccagatcaaatagtgtgttctcctgttccc
atgttacgggatctggcacagaacactgcaatcagtgttaattttaaagacccacagttt
gcggaagattacatttttaaagctgtaatgcttccaggagcaagaaaaccagcaccagtg
ttgaaacctagtgactgggaaaaatccagcaacggacggcagtggaagccccagcttggc
tttaatcgggacaggcggcctgtccacctggatcaggcggcgttcaggactttggggcat
gttatgccgagaggctcaggaactggggtttacagcagtgccgcaccaccacctgcggct
taccaggggagcttatacaggccgctgctgagaggccacgcccacattccaaaacttatg
tcaaacatgaggccccaggattcctggcgagggcctcctccccttttccagcagcagaga
tttgacagaggcgttggggctgaacctctgctgccatggaaccggatgctccaaacccaa
aatgcagccttccagccaaaccagtaccagatgctagccggacctggcgggtatccaccg
agacgtgatgatcgtggagggagacagggatatcccagagaaggaaggaaataccctttg
ccaccaccttcaggaagatacagttggaattag
DBGET
integrated database retrieval system
