Equus caballus (horse): 100051198
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Entry
100051198 CDS
T01058
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ecb
Equus caballus (horse)
Pathway
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100051198 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100051198 (SKIV2L)
Enzymes [BR:
ecb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100051198 (SKIV2L)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100051198 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
100051198 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
100051198
NCBI-ProteinID:
XP_001492630
Ensembl:
ENSECAG00000021823
VGNC:
23002
LinkDB
All DBs
Position
20:32541722..32551641
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRAVELGCTGRWELLNAPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLSALGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHRAPASGLLSLSRLLEPLDLGGGDEDETDAVGQPGSPRGD
TVSAPPCSAPLARASSLEDLVLKEASTAVSPPEPPKPPPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFADVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDTTGQLVDLPEYYNWGEELTETQGLIQRRIIDSVNGLKSLS
VGRVVVVKNQEHHNALGVILQVSSNSTSRVFTTLVLCDKPMSEDPQQKGPASPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSKRQQPKFKKEPPLAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPRF
PAQYLKLRERMQIQKEMERLSFLLSDQSLLLLPEYHQRVEVLRTLGYVDDAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSSGDPGDQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgactcgtgctacctcccccagatcccctggatctgccccttcgg
gccgtggagctgggatgcactgggcgctgggagctgctgaatgcgcctggggctccagag
agcacccttccccatggcctccctccctgtgccccagatctgcagcaagaggcagagcag
ttgtttctgtcatctccagcctggctgcctctgcatggtgtggagcactcagcccgaaaa
tggcagaggaagatggatccctggtctctcttgtccgcattgggagccccagtcccctcc
gacttacaggcccaaagacacccaaccacaggccagatactgggctacaaggaggtcctg
ctggagaatacaaacttgtcggctacgacctccttgtctcttcgccggcccccagggccc
atctcccagtccctgtgggggaatccaacccagtaccctttctggccaggtggaatggat
gagcccaccataacagatctgagcactcgggaggaggccgaggaggagatagactttgag
aaagatcttcttactgttccacctggctttaagaaaggtgtagactttgcaccaaaagat
caccgagctccagcttccgggttgctcagtctcagccgtctgctggagcccctggatttg
ggtgggggcgatgaggatgagactgatgcagtgggacagccaggaagtcccagaggggac
actgtttcagcccctccctgcagtgctcccctggcccgagcaagcagcttggaggacctg
gtgttgaaggaagcgtctacagctgtatctcccccagagccccccaaacccccgcctcag
gagcagtgggccattcctgtggatgtcacctccccagttggtgatttctaccgcctcatt
ccccagccggccttccagtgggcatttgagccagatgtgtttcagaaacaggctatcctg
cacttggaacggcacgactcagtctttgttgcggctcacacatctgctgggaagacagtt
gtggctgaatatgccattgcccttgcccagaaacacatgacgcgcaccatctacacgtcg
cctatcaaggctctgagcaaccagaagttccgagacttccgaaacacatttgcagatgtg
ggactgctcactggggacgtgcagctgcacccagaggcctcctgcctcatcatgacgaca
gaaatccttcgctccatgctgtatagcggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactatatcaatgatgctgagcgcggggtcgtgtgggaggaggtg
ctcatcatgctccctgaccatgtctccatcatccttctgagtgctactgtccccaatgcc
cttgaatttgctgactggattgggcgactgaagcgtcgtcagatctatgtgatcagcact
gttgctcgccccgtccccttggagcattatctcttcacggggaacagccccaagacccag
ggggagctcttcctattgctggactcccgaggtgccttccacacaaaggggtactacgca
gctgtggaggccaagaaggagcggatgagcaaacacgcccagaccttcggggccaagcag
cctacgcatcagggggggcctgcacaggaccgtggggtgtacctgtccctcctggcctcc
ctccgcacccgtgcacagctgcccgtggtggttttcaccttctcccggggccgctgtgat
gagcaggcctcgggcctcacctcccttgacctcaccacaagctcagagaagagtgagatt
cacctcttcctccagcgctgccttgctcgcctccgtggctctgaccgccagctgcctcag
gtcctgcacatgtcagagctcctgcatcgcggcctgggtgtgcaccacagtggcatcctg
cccatcctcaaggagatcgtggagatgctcttcagccgtggcctggtcaaggtcttgttt
gccacagagaccttcgccatgggtgtaaatatgccggcccgaacggtggtgtttgactcc
atgcgcaagcacgacggctccaccttccgggacctgctccctggggagtacgtgcagatg
gcaggccgggcgggccggaggggcctggacccgacaggcactgtcatcctgctctgcaag
ggccgcgtgcctgaaatggcagacctgcaccgcatgatgatggggaagccatcccagctg
cagtcccagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggatgccctc
agggtggaggacatgatgaagaggagcttctctgagtttccatcccgaaaggacagcaag
gcccatgaacaggctctcgctgaactgaccaagaggctgggggccttggaggagcctgac
actactggccaactggttgacctgcctgagtattacaactggggagaggaactgacagag
acccaaggcctgatccagcgacgcatcatagattctgtgaatgggctgaaatctctctca
gttggaagggtggttgttgtgaagaatcaggagcatcacaacgcattgggtgtgatcctg
caggtctcctcgaactccaccagcagagtattcacaacgctggtcttatgtgataagccc
atgtctgaggacccacagcagaaggggccagcctcccctgatgtgccctacccggatgac
ctcgtgggattcaagctgttcctgcctgaaggaccctgtgaccacactgtggccaagctc
cagccaggagatgtggctgccatcaccaccaaggtgctccgggtgaacggggagaagatc
ttggaggacttcagcaagagacagcaaccgaaattcaagaaggagcctcccttggcagct
gtgaccactgctgtccaggaactgctgcgtctggcgcaggcctacccagcaggaccgcct
accctcgaccctgtcaacgacctgcagctcaaagatgtgtcagtggtagagggaggtctc
cgggcccggaagctagaggagctgatccggggggctcagtgtgtgcacagcccccgtttc
cctgcccagtacctgaagctgcgggagcgaatgcagatacagaaggagatggagcggctg
agcttcctgctgtcggatcagtcactgctgctgctccctgagtaccaccagcgagtagag
gtgctccgaaccctgggttatgtagatgacgcgggcaccgtgaagctggcagggcgggtg
gcttgtgccatgagcagccatgagctgctcctcactgagctcatgttcgacaatgccctg
agtgccctgcggcccgaggagattgcagccctactctctggcctggtgtgccagagctct
ggggaccctggggatcagcttccaagtaccctcaaacagggagtggaacgtgtccgggct
gtggccaagaggattggtgaagtccaagtggcctgtggcctgaaccagacagtggaggaa
tttgtgggggagctgaattttgggctggttgaggttgtatatgagtgggcccggggcatg
cccttctccgagttggcagggctctcagggacccccgaaggcctggtggtccgctgcatc
cagcgcctggctgagatgtgtcgctcactgcggggggcagcccgcctggtaggtgagcct
gtgctaggtgccaagatggagacagcagctaccctgctacggagggacattgtctttgcg
gccagcctctacactcagtga
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integrated database retrieval system
