Equus caballus (horse): 100051945
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Entry
100051945 CDS
T01058
Symbol
MTREX
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ecb
Equus caballus (horse)
Pathway
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100051945 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100051945 (MTREX)
03041 Spliceosome [BR:
ecb03041
]
100051945 (MTREX)
03009 Ribosome biogenesis [BR:
ecb03009
]
100051945 (MTREX)
03016 Transfer RNA biogenesis [BR:
ecb03016
]
100051945 (MTREX)
Enzymes [BR:
ecb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100051945 (MTREX)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100051945 (MTREX)
Spliceosome [BR:
ecb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100051945 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
100051945 (MTREX)
Ribosome biogenesis [BR:
ecb03009
]
Eukaryotic type
Pre-60S particles
Helicases
100051945 (MTREX)
Transfer RNA biogenesis [BR:
ecb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100051945 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100051945
NCBI-ProteinID:
XP_023481435
Ensembl:
ENSECAG00000023723
VGNC:
23003
LinkDB
All DBs
Position
21:complement(17537285..17654613)
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPSGSAEKAGKRFDEKSQSESTNIG
KTKRDADFDGTDEPIFGKKPRVEESITEDVSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKSSEQQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPMDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAMDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggatgagctcttcagcgtgttcgaggacgactcgactactgcg
cccggaactaaaaaagacaaggaaaaggagaaggggaaatggaaggggccgtcagggtct
gcggaaaaggccgggaaacgttttgatgaaaaatcacaatcagagtcaacaaatattggg
aaaaccaagagagatgcagatttcgacggcacagatgaacccatttttggaaagaagccc
agggtagaagagtcaataactgaagacgtaagtttggcagatttgatgcccagagttaaa
gtacaatcagttgaaactgttgaaggttgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcagtgtgttgataacaatcagtctgttttagtatct
gcacatacatcagcgggaaaaactgtatgtgctgagtatgccattgcattagccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctttgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtggtatgggaagaaactattattttgcttcctgataatgttcactatgtc
tttctttcggctactattccaaatgctcgacagtttgctgaatggatttgccatctacat
aaacagccttgtcatgtcatttatacagattatcggcctactccattgcaacactacatt
tttccagcagggggagatggcctgcaccttgtggttgatgaaaatggtgactttagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaagggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggagagaaattttcaacctgtaattatattcagttttagtaagaaagattgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgactgcttgtctgatgaagataagaagctccctcag
gttgaacatgtacttcctcttttgaagcgtgggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttccgaaggattgataaaggccttattt
gccacagagacttttgccatgggaattaacatgccagctagaactgttttatttacaaat
gcccgaaaatttgatgggaaagatttccgatggatttcctctggtgaatacattcagatg
tccggtcgtgctggaaggaggggaatggatgatagagggattgtaattcttatggtggat
gaaaagatgagcccaacgattggaaaacaactgcttaagggatcagctgatcctctaaat
agtgcttttcatttgacctacaacatggttttgaacttactacgtgtagaagaaattaat
ccagagtacatgttggaaaaatccttctaccagtttcagcactatagagccattccagga
gtagtagaaaaggtaaagagctcagaacaacagtataataaaatagtaataccaaatgaa
gaaagtgttgtcatctattacaagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggtgtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaagagagcctgaaaaattcagctactgaggctgcaaaaccagctaaacca
gatgagaaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagc
agtgttaggctttacattcctaaagaccttcgaccaatggacaatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctatt
gatgatatgggcattcaagatcaagggctgaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatcccaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatggatattaaatctgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgaccta
tctgcagaacaggcaacggcactcctaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggaaacttatctaagc
tcattcaaacctcacttgatggatgtagtatatacctgggcaactggagctacatttgct
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgtctg
gaagaactacttcgacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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