Equus caballus (horse): 100052499
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Entry
100052499 CDS
T01058
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ecb
Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecb03000
]
100052499 (RC3H1)
04121 Ubiquitin system [BR:
ecb04121
]
100052499 (RC3H1)
Transcription factors [BR:
ecb03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
100052499 (RC3H1)
Ubiquitin system [BR:
ecb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100052499 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
100052499
NCBI-ProteinID:
XP_023496344
Ensembl:
ENSECAG00000021208
VGNC:
22260
UniProt:
A0A3Q2HEM0
LinkDB
All DBs
Position
5:complement(9608570..9687858)
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AA seq
1131 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPPAAILPDE
GAVDLPSRKPPALPNGIVSAGNTAQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLLE
SVPKSISALPVNPHPAPPRGPTDLAAMPVTKPLQMVPRGSQLYPAQQADVYYQDPRGAAP
PFEPAPYQQGMYYTPPPQCVSRFVRPPPSAPEPSPPYLDHYSPYLQDRVVNSQYGTQPQQ
YPPMYPPHYDGRRVYSAQSYAREEIFRESPIPVEIPPAAVPSYVPESRERYPQMEGYYPV
APHPTQIRPSYIREPPCSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPT
LPPTFHQEEFLEEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMM
NVESKGVRDQRLDLQRRTAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMAP
QGAPTKPINISDYSPYGTHGGWGGSPYSPHQNIPSQGHFSERERVSISEVASHGKPLPSA
EREQLRLELQQLNQQISQQTQLRGLEAVSNRLVLQREANTLAGQSQPPPPPPKWPGMISS
EQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPEPQNKVPAEDLTLT
FSDVPNGSALTQDNISLLSNKTSSLNLSEDPEGGGDSEGSQRSGVTPSSAP
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacagtggacggatttcctctcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgagctccttcccgtgaactcagcattgctgcagctcgtgggtgctcaggtccctgag
caacagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccgatgcagaggaagctggtgactctg
gtccactgccagctagtggaagaagaaggcagggttcgtgccatgcgggcagctcggtct
ttaggtgaacgaacagttacagagctcattctccagcaccagaatcctcagcaactctct
tccaatctttgggcagcagtcagggctaggggctgccagttccttggaccagcaatgcag
gaggaagctctaaagctggttctcctggccttagaagatggttctgctttgtcaagaaaa
gtgttggttctctttgtggtgcaaaggttggagccacgatttcctcaagcctctaaaact
agcatcggacacgtcgtccagctcctttatcgagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttagaacctatgaagctctgcgg
cgagaacatgactcccagatagtgcagattgcgatggaagcaggcttacgaattgcacca
gaccaatggtcctctttgctttatggagaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagtgttcaggaactaacaattgct
ctccagcggactggagatccagcgaacttgaaccgactaagaccccatttggagctgtta
gcaaacatcgaccctagtccagatgctcctcctcctacttgggaacagctagaaaatggg
ctggttgctgtgcgtacagtggtacatgggctggttgattatatccagaaccacagcaaa
aaaggagcagatcaacagcagcccccacagcatagcaaatacaaaacatacatgtgtcga
gatatgaagcagagaggaggatgccctcggggagccagctgtacgtttgcacactcacaa
gaggaactggaaaaatttcgtaaaatgaacaaacgcctggttcccaggagacccctgagt
gcttctttgggtcaacttaatgaggtgggcctgcctccagcagctattcttccagatgaa
ggtgcagtggatctgcctagcagaaaaccccctgctctgccaaatggaattgtgtcagca
gggaatacagcacagctgattccacgaggaacggatcccagctacgattctagtctgaaa
ccaggaaagatagaccatctgagcagtagtgcccctggatccccccctgacctgctggaa
tctgtccctaagagtatatctgccttacctgtgaatccacatcctgcacctccaaggggg
ccaacagacctggctgctatgcctgtcaccaaaccacttcagatggtcccacgaggttct
cagttgtatccagcacaacaggcagacgtttattatcaggatcctcgaggagctgctcca
ccatttgaaccagcaccttatcaacagggtatgtactatactccacccccgcagtgtgtg
tcccgctttgtccgacctccaccatctgctcctgaacctagtcctccctacttggatcat
tattcaccctacctccaagatcgtgtagtaaattctcaatatggcacacagccacaacag
taccctcctatgtacccaccacactatgatggccgtcgagtatactctgctcagtcttat
gcaagagaagagattttccgagaaagtcctatacctgttgagattccacctgcagcagta
ccatcgtatgtaccagaatccagagaaagatacccacagatggagggttactatccagtg
gctcctcatccaactcagatcagaccttcgtacatcagagaacctccttgcagccggctc
cctcctcctccccagccccatcctagtctagatgagctacatcgaagacgaaaggagata
atggcccagctagaggaaaggaaggttatctctccacctccttttgcaccttcaccaaca
ttgcctcctaccttccaccaagaggaatttttggaggaagacttgaaggtagctgggaaa
tacaaaggaaatgattatagccagtactctccctggtcatgtgacaccatcggctcctac
attggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatgatg
aacgtggagagtaaaggagtgagagaccagcgattagatctccagagaagaacagcagaa
accagtgatgatgacctcatcccatttggagatcgaccaacagtatctcggtttggtgcc
atttctcgaacttccaaaacaatatatcagggtgctggtccaatgcaggctatggcacct
cagggagctcccacaaaacctattaacatttcagattatagtccatatggaacccatggt
ggctggggaggttctccatattcacctcatcaaaacataccttctcagggacacttcagt
gaaagggagagagtatccatctcggaagtggccagtcatggaaaaccccttccatctgct
gagagggagcaacttcggctagaattgcagcagctaaaccaacaaattagccaacagacc
cagctacgtggactagaggctgttagtaacaggctggtgttgcagagggaggcgaacacc
ctggcaggccaatcacagcccccaccaccacctccaaaatggcctggaatgatctcaagt
gagcagttgagcttggaactgcaccaggtggaaagggaaatcgggaagagaacccgggaa
ctgagtatggagaaccagtgttctctggacatgaaaagcaaattgaatacaagtaagcaa
gcagaaaatggacaaccggaaccacaaaataaggttccagctgaggaccttacattgaca
ttcagtgatgtaccgaatggatcagcgttgacacaagacaatatcagcctcctatcaaac
aagaccagctctctgaacctatcagaggaccctgagggaggaggggacagcgagggctcc
cagagatcaggggttacacccagttctgctccctga
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integrated database retrieval system
