Equus caballus (horse): 100053580
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Entry
100053580 CDS
T01058
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
ecb
Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100053580 (HELZ)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
100053580 (HELZ)
3'-5' decay
Other 3'-5' decay factors
100053580 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PAM2
PhoH
zf_CCCH_4
Mov-10_helical
zf-CCCH_4
AAA_22
AAA_7
Bac_DnaA
AAA_16
Mg_chelatase
AAA_5
Motif
Other DBs
NCBI-GeneID:
100053580
NCBI-ProteinID:
NP_001288136
Ensembl:
ENSECAG00000010404
VGNC:
18745
LinkDB
All DBs
Position
11:complement(14017466..14194333)
Genome browser
AA seq
1945 aa
AA seq
DB search
MEDRRAEKSCEQACESLKRQDYEMALKHCTEALLSLGQYSMADFTGPCPLEIESIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGDGAFQAVLCCMQLKGKLQTVSNILAKSLT
GESLNGMVTKDLTRLKTLLTETETATSNVLSGYHVEDLEGGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQNENKQLSGSYMETLI
EKWMNSLSPEKVLSECIEGIKVEHNPDLSVTVNTKKSHQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTAKRWDASSKTIIDFEPNE
TTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTKTLSEDTLAGRLVMTKVNAVYLLPVP
KEKLVQTQGTKEKVYEATIEEKTKEYIFLRISRECCEELNLRPDYDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDITMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALATKSTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENNSLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGNTNKLQQSPPKGKNLHHTQND
HFQNDGIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQTHGRGSPIPYGLGHHPPV
SIGQPQNQHQEKDQHEQSRNGKSDTNNPGPEISKIQTPEKKPTESKQIDLESNLQNRSPE
SRPGVVYPNTKFHRKDNLNPRHINLPLPAPHAQYAIPSRHFHPLPQLPRPPFPIPQQHAL
LNQQQNNLPEHPNQMPPQPNQVVQQQNPLNQLTQQPPPQLSPAYQAGPSSAFFSNAVSHR
PQSPHAEAVMPEQQPPPMLQEGHSPLRAIAQPGPVLPSHLNNFTDENPPGLPVGEALDRL
HGSVALETLRQQQVRLQQWNEHHAYLSQGTIPYPHHHHPHPHLQHLPQPPIGLHQPPVRA
DWKLPSSAEDEAETTDSRFQDLIRELSNRDQSETRELAEMPPPQSRLLQYRQIQTRSPPA
VPSPPSSTDHSSHFSNFNDNSRDVEVANNPAFPQRLPPQMFSSPFSLPSEHLAPPPLKYL
APDGAWTFANLQQNHLMGPGFPYGLPPLPHRPPQSPFVQMQNHQHAVGQEPFHPLSSRTV
SSSSLPSLEEYEPRGPGRPLYQRRISSSSVQPCSEEVSTPQDSLAQCKELQDHNNQSSFN
FSSPESWVNTTSSAPYQNIPCNGSSRTAQPRELIAPPKTVRPPEDELKSENLEVSSPFNY
SVLQHLGQFPPLMPNKQIAESAHSSSQQSSGGSKPAMSYASALRAPPKPRPPPEQAKKSS
DPLSLFQELSLGSSSGSNGFYSYFK
NT seq
5838 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagaagagctgagaagtcatgtgaacaagcatgtgaatcacttaagaggcag
gactatgaaatggccctcaagcactgcacagaggccctcctttctcttggccagtactcc
atggccgacttcacagggccatgtccactggagatagaaagcatcaaaattgagagtctt
ctttatagaattgcctcatttttgcaactgaaaaactatgggcaagctgatgaagattgt
aggcatgtgctgggagaaggactggcgaagggagatggtgcctttcaggcagtgctttgc
tgcatgcagctgaaaggaaagctccagaccgtatccaacattcttgccaagtcactgaca
ggggagtccctgaatgggatggtaacaaaagatttgacaagactaaaaacacttctcaca
gaaacagagacagcaactagtaatgtcctctctggatatcatgtggaagacttagaaggg
ggatcttgtaatggttggcatttccgcccaccacctaggggaatcacaagcagcgaggaa
tatactttgtgtaaaagatttttagagcaaggaatctgtaggtatggtgcccagtgtact
tcagcacattcccaggaagaactagcagaatggcagaaaagatatgcttcacggttgata
aaattgaaacagcaaaatgagaataaacagctctcaggcagttacatggaaaccttgata
gaaaagtggatgaattcattatctcctgagaaagtgcttagtgaatgtatagaaggaatt
aaggtagagcataatcctgatctgtcggttactgtcaacaccaaaaaatctcaccagacg
tggacttttgctctcacgtgtaagcctgcaagaatgctgtatcgtgtagcattgctttat
gatgctcatcgtcctcattttagtatcattgccatatctgccggagatagtactacccag
gtatcacaagaagtcccagaaaactgtcaagaatggataggaggaaagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattggaaccagtactcatgcaaagagtaatg
attgatgcagcttctacagaagatcttgaatacctgatgcacgcaaaacaacagctagta
accacagctaagcgctgggatgcttcttctaagactattatagattttgaacctaatgaa
actactgatttggagaagagccttcttatcagataccaaattcctctctctgctgaccag
ctgtttactcagtccgttttagacaaatcattgaccaagaccaactatcagtcgcggttg
catgaccttctttatattgaggagatagcccagtataaagaagtcagcaagttcaacctt
aaagtgcaattgcagattctagcaagcttcatgctcactggagtttctggaggtgcaaag
tatgctcagaatggacaactttttggtcgctttaagcttactaaaacactttctgaagat
actttggctggacggctggtgatgaccaaagtcaatgctgtttatttattaccagtccct
aaagagaagttagtacagacccagggaaccaaagagaaggtttatgaagctactattgaa
gaaaaaacaaaagaatatatatttttaaggatatccagggaatgctgtgaagaacttaat
cttcgacctgattatgacacacaggttgaacttcagtttcagttaaatcgattacccctc
tgtgaaatgcattatgcgctagacaggatcaaggacaatggggttttatttccagacatc
actatgactccaactataccttggagtcccaatagacagtgggatgaacagttggatcct
cggctaaatgcaaaacagaaagaggctgttctggccattacaacgccactttcaatacag
ctgcctcctgttctcatcatcggaccctatgggacgggcaaaacattcactctagctcag
gccgtcaagcacatactccagcaacaggagaccagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtatatttcagaaatcgctgggtaaagactgtccaccca
gttgtgcatcagtactgtttgatctcaagcgcacattccacctttcagatgccacagaaa
gaagatattcttaaacatcgagtggttgttgttacattgaatacttcccagtacctctgt
cagttggaccttgaacctgggttttttacacacattttattggatgaagctgcccaggcc
atggagtgtgaaaccattatgcctctagcattagcaactaaaagcactcggattgtcttg
gctggtgaccacatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcacgtttcattacttgatcgactttatgagcattaccctgccgagtttccatgtagg
atcctcctctgtgagaactaccgctcccatgaagctatcatcaattacacctctgagctc
ttctatgagggcaaactgatggccagtggaaagcaaccagcacacaaagatttctaccca
ttaactttctttacagcacgaggggaagatgtacaagagaaaaatagcacagctttttat
aataatgcagaggtatttgaagtggtagaacgtgtggaagagttaagaaggaagtggcca
gtagcgtgggggaagttagatgatggcagtattggtgtggtgactccgtatgctgatcaa
gtgtttaggatacgtgctgaacttcgaaaaaagagattatctgatgttaatgtagaaagg
gtgctgaacgttcaaggaaagcaattcagagttttgtttcttagcacagtacgtacaagg
catacttgtaaacataaacagacaccaattaaaaagaaagagcaactgctggaagattcc
acagaggacttagattatggttttttatctaactacaaacttctcaatactgccatcaca
agagcacaatctctggttgctgtggtgggtgatcccattgctctgtgctctattggaaga
tgcaggaaattttgggagcgatttattgccctgtgtcatgaaaataatagcctacatgga
atcacgtttgaacagatcaaagctcagctagaggctttagaactaaagaagacatatgta
ttgaatccactggcacctgaatttatcccccgggctctaagactgcagcattcaggaaat
accaacaagctgcagcaatcaccccccaaggggaaaaacctccatcatacccagaatgat
catttccagaatgatggaattgttcagcccaatccttccgtacttattggcaatcctatt
agagcatacactcctccacctcctcttggacctcaccctaatttggggaaatctccaagc
cctgttcagagaatagatcctcacactgggacgagtattctttatgtacctgctgtctac
ggagggaatgtagttatgtcggtgcctttacctgtaccatggacaggataccagggtagg
tttgcggttgatcctcgaatcattacgcatcaggcagcaatggcctacaatatgaacctc
ttacagacacatggacgggggtctcctataccttatggccttgggcatcacccacctgtc
agcatagggcagccacaaaaccagcatcaggagaaggatcagcatgagcaaagtcgaaat
ggtaaaagtgatacaaataatcctggaccagaaattagtaagattcaaacaccagagaaa
aagcctacagaatcaaaacagattgatttggaatcgaatctacagaacagaagtcctgaa
tcacgtcctggtgttgtttatcccaataccaaatttcatcgcaaagataatctcaaccca
agacatataaatcttcctcttcctgctccccatgcacagtatgcaatccctagtcgtcat
tttcatccccttccccagctaccaagaccaccgtttccaattccgcagcaacacgccttg
ttaaatcagcagcagaataatttgcctgaacatccaaatcaaatgccaccccaaccaaat
caggtagtccagcagcagaatccgttgaatcagctgactcagcagccacctcctcaactt
tctcctgcctatcaggcgggccccagcagcgcttttttcagtaatgcagtttctcatcga
ccgcagtcccctcatgcagaggctgtgatgcctgagcagcagccccctcccatgctgcag
gaaggccacagtcctctacgagccattgcgcagcccggccccgttcttccttcacatctg
aataacttcactgatgagaatcccccaggactgcctgtaggggaggctttagatcgtctg
catgggagtgtagctctggaaacattacggcagcagcaagtgcggttacagcagtggaac
gagcatcatgcctatctcagtcagggcactattccctacccgcaccatcaccatcctcat
cctcacctccagcatcttcctcagccgcccattggattacatcagccaccagtgagggca
gactggaagctccccagcagtgctgaagatgaagcagaaaccacagactcaaggtttcaa
gatttaatcagagaactgtctaatcgtgatcaaagtgaaacacgggaactagctgaaatg
ccaccacctcaatcaagacttttgcaatatagacaaattcaaactaggagcccaccagca
gtcccatctcccccatccagtacagaccacagtagccacttttctaactttaatgacaac
agcagagacgttgaagtagccaacaacccagcatttcctcagcgcctaccgccccagatg
ttcagctcacctttctcattgccatctgaacaccttgcccctcctcccttgaaatacctg
gcacctgatggagcatggacttttgctaacttacaacagaatcacctaatggggccaggt
tttccctacggcctacctccattgcctcacaggccaccgcaaagcccttttgtacaaatg
cagaatcatcaacatgctgttggtcaagagccatttcacccattgtcatctcgaacagta
tcgtcttcttcgctccctagcttagaagagtatgaacccagaggacctggtcggcccttg
taccaaagaagaatctcatctagctcagtccagccttgttctgaagaagtaagcactcct
caagacagtcttgctcagtgtaaagagcttcaggaccataataaccaatcttctttcaac
ttttcatccccggagtcctgggtcaacaccacctcatctgccccctatcagaacattccg
tgcaatggatccagcaggacagctcagcccagagagttgatagctccgccgaagactgtc
agacctcctgaggatgagctgaagtccgaaaacctcgaggtgtccagtcccttcaactac
agcgtgctgcagcatctcggccagtttccccccctcatgcccaacaagcagatcgcggag
tcggcccacagcagcagccagcagagctctgggggcagcaagcccgccatgtcctatgcc
agcgctctgcgggcccctcccaagcccaggcccccgcctgagcaggccaagaagagtagc
gaccctctgtctctgttccaggaactcagcctggggagctcatcgggcagcaatggcttt
tactcctattttaaataa
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integrated database retrieval system
