Equus caballus (horse): 100053605
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Entry
100053605 CDS
T01058
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ecb
Equus caballus (horse)
Pathway
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100053605 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100053605 (EDC4)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100053605 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
100053605 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EDC4L
WD40_Prp19
Beta-prop_TEP1_2nd
DUF445
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
100053605
NCBI-ProteinID:
XP_001498325
Ensembl:
ENSECAG00000010812
VGNC:
17417
LinkDB
All DBs
Position
3:18908151..18919536
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AA seq
1405 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVPDPLCSGDGT
STNKPGLRAMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FILEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHNTWPVDVSQIKQGFIVVKGHSTR
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVNVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGASAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHP
AHEDFAFGESRPELGSESLASAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFM
TPSASLQQITASPSSSSSSSSSSSSSSSSSSSSLTAVSAMSSTSAVDPSLPRPPEELTLS
PKLQLDGSLTVSSSSSLQASPRSLLPGLIPGPADKLTSKGPGQVPAAAAALSLELQEVEP
LGLTQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAASAL
HLLSPRPRPGPELGSQLGLDGSPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRE
TCSSLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDVSAEQSDHDDEVASLASAAGGFG
TKVPTPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSAMGSRLMEHQVAELPEDWPALIWQ
QQRELAELRHSQEELLQRLCTQLEGLQSTVMGHVERALESRHEQEQRRLERALAEGQQRG
GQLQEQLTQQLSQALSSAMAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTA
VEGSLKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQ
INDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSV
RAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPA
AHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQP
VLLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAE
PHNSLGKAARRLSLMLHGLVTPSLP
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccgacccgctgggggccccagtgcagagagccagcggccatctaatgcc
tacaatggggacctcaacgggctcctggtcccagaccccctctgctcaggtgatggtact
tcaacaaacaagcctggtctccgggccatgccacctattaatctgcaggaaaagcaggtc
atctgcctttcaggagatgacagctctacctgcatcgggattttggccaaggaggtggag
attgtggccagcagtgactctagcatctctagcaaggcacgggggagcaacaaggtgaaa
atccagcctgttgccaagtatgactgggagcagaaatactactatggcaacctgattgct
gtgtccaattctttcttggcctatgccattcgggctgccaacaatggctcagcgatggtg
cgggtgatcagtgtcagcacttcagagcggaccctgctcaagggcttcacaggcagtgta
gctgatctcgcctttgcacacctcaactccccacagctggcctgcctggatgaggcaggc
aacctatttgtgtggcgcttggctctggttaatggcaaaattcaagaagagattttggtc
catatccggcagccagagggcacaccactgaaccacttccgtaggatcatctggtgcccc
ttcatcctcgaggagagtgaggactgctgtgaggagggcagcccaacagtggccctcttg
catgaggaccgggctgaggtgtgggacctggacatgctgcgctccaatcacaacacctgg
cctgtggatgtcagccagatcaagcagggcttcatcgtggtaaaaggccatagcacgcgc
ctaagtgaaggagccctctcccctgatgggactgtcctagctaccgcaagccatgatggt
tttgtcaagttctggcagatctacattgagggccaggatgagccaaggtgtctgcatgag
tggaagccacatgatgggcgacccctctcctgcctcctgttctgtgacaaccacaagaaa
caggaccctgaggtccctttctggaggttcctcattactggcgctgaccagaatcgggag
ctaaagatgtggtgcacagtatcctggacctgcctgcagaccattcgcttctccccggat
atcttcagctcagtgaatgtgccccccagcctcaaggtttgcctggatctctcagcagaa
tacttgattctcagcgatgtgcaacggaaggtcctctatgtgatggagctgctgcagaac
caggaggagggccgtgcctgcttcagctccatctctgagttcttgctcacccaccctgtg
ctgagcttcggtatccaggttgtgagtcgctgccggctgcggcacactgaggtgctgcct
gctgaggaggagaatgacagcctaggggctgatgggacccacggagccagtgccatggag
tctgcagctggtgtgctcatcaagcttttttgtgtgcatactaaggcattgcaggatgtg
cagatccgtttccagccacagctgaaccctgatgtggtggccccactccccacccaccct
gcccatgaggactttgcatttggagagtctcggcctgaactgggctccgagagcctggct
tcagctgctcatggctcccagcctgacctccgacgcattgtggagctgcctgcacctgct
gacttcctcagtctgagcagtgagaccaagcccaagctgatgacacctgacgccttcatg
acacctagcgcctccctgcagcagatcactgcatcccccagtagtagcagcagcagcagt
agcagcagcagcagcagcagcagcagcagcagctcctctcttacagctgtgtctgccatg
agcagtacctcagctgtggacccctccttgcccaggccacctgaggagctgaccttgagc
cccaagctgcagctggatggcagtctgacagtgagcagcagcagtagcctgcaggcaagc
ccacgcagcctcctgcccggcctgatcccaggtccagctgacaaattgacttccaaagga
cctgggcaggtgcctgctgctgctgctgcactatccctggagctgcaggaagtggagccc
ctggggctaacccaggcttcccctagccgcactcgctcgccggatgttatctcctcagct
tcgactgccctgtcccaggacatccctgagattgcatctgaggccctgtcccgtggcttt
ggctcctctgctcctgagggccttgagccagacagtatggcttcagctgcctcagcactg
cacctgctgtccccacggccccgaccagggcctgagcttggctcccagcttggcctagat
ggaagccctggggatggggatcggcatagtaccccttcgctcctggaggcggccttgacc
caggaggccacagcccctgacagtcaggtctggcctacagcaccagacattactcgtgag
acctgcagcagcctggcagagagccccaggaatggcctccaggaaaagcacaagagcctg
gccttccaccgaccaccttatcacctgctgcagcaacatgacagccaggacgtcagcgct
gagcaaagtgaccacgatgatgaggtagccagccttgcctctgctgcagggggctttggc
accaaagtccccactccacggctgcctgccaaggactggaagactaagggatcccctcgg
gcctcacccaagctcaagaggaagggcaagaaggatgatggggattcagccatgggatct
cggctcatggagcaccaggtggcagagcttcctgaggactggccagcattaatttggcaa
cagcagagagagctggcagagctgcggcacagccaagaagagctgctgcagcgtctgtgc
acccaacttgagggcctgcagagcactgtcatgggccatgtagaacgtgccctagagtca
cgacacgagcaggagcagcggcggctggagcgggcattggctgaggggcagcagcggggt
gggcagctgcaggagcagctgacacaacagctgtcccaggcactgtcttcagctatggct
gggcggttggagcggagcatacgagatgagatcaagaagacggtacctccgtgtgtctct
aggagtctggagcccgtggcaggccaactgagcaactcagtggccaccaagctcacagcc
gtggagggtagcctgaaagagaatatctccaagctgctaaagtccaagaacttgactgac
gccattgcccgagcagctgcagacacattacaggggccaatgcaggctgcctaccgtgaa
gccttccagagtgtggtgctgcctgcctttgagaagagctgccaggccatgttccaacag
atcaatgatagcttccgactgggcacacaggaatacttgcagcagctagagagccacatg
aagagccggaaggcacgagagcaggaggcacgggagcctgtgttggctcagctaaggggc
ctggtcagcacactgcaaggtgccactgagcagatggcagccactgtgtccagcagtgtt
cgggctgaggtgcagcaccagttgcacgtggctgtgggcagcctgcaggagtcaatttta
gcacaagtccaacgcattgttaagggtgaggtgagtgtagcactcaaggagcagcaggct
gccgtcacctctagcatcatgcaggccatgcgctcagcagctggcactcctgtccctgct
gcccacctcgactgccaggcccagcaagcccatattctgcagctgctgcagcagggccac
ctcaatcaggccttccagcaggccctgacagctgctgacctgaacctggtgctttacgtg
tgtgaaactgtggatccaggccaggtttttgggcagccaccctgcccactctcccagccc
gtgctcctttctctcatccagcagctggcctctgaccttggcactcgaactgacctcaag
ctcagctacctggaagaggctgtgatgcacctggaccacagcgaccccatcactcgggac
cacatgggctccgtcatggcccaggtgcgccagaagctcttccagttcctgcaggccgag
ccacacaactcacttggcaaagcggcccggcgtctcagcctcatgctgcatggccttgtg
acccccagcctcccttag
DBGET
integrated database retrieval system
