Equus caballus (horse): 100053721
Help
Entry
100053721 CDS
T01058
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
ecb
Equus caballus (horse)
Pathway
ecb05016
Huntington disease
ecb05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100053721 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
100053721 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100053721 (HTT)
04131 Membrane trafficking [BR:
ecb04131
]
100053721 (HTT)
03029 Mitochondrial biogenesis [BR:
ecb03029
]
100053721 (HTT)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100053721 (HTT)
Membrane trafficking [BR:
ecb04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
100053721 (HTT)
Mitochondrial biogenesis [BR:
ecb03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
100053721 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EZ
Rad26-like_helical_rpts
Death_3
Motif
Other DBs
NCBI-GeneID:
100053721
NCBI-ProteinID:
XP_023494234
Ensembl:
ENSECAG00000008684
VGNC:
18914
LinkDB
All DBs
Position
3:complement(118867293..119029512)
Genome browser
AA seq
3126 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQPPPPPQPPQPPPQAQPPPPQQQPPPPPPPPPPGPAAA
EEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSDDAES
DVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLVRPQK
CRPYLVNLLPCLTRTSKRPEESVQETLATAIPKIMASFGNFANDNEIKVLLKAFIANLKS
SSPTIRRTAAGSAVSICQHSRRTQYFYTWLLNVLLGLLVPVEDEHSTLLILGVLLTLRYL
VPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLRYTQHQDHNVVTGALELLQ
QLFRTPPPELLQALTTAGGLGRLAAAKDEPSCRSRSGSIVELIAGGGSSCSPVLSRKQKG
KVLLGEAAALEEDSESRSDSSSPAFAASVKGEIGGELAASSGVSTPGSASSAADSAGHDI
ITEQPRSQHTLQPDSVDLTGCDLTSAATDGDEEDILSHSSSQISAVPSDPAMDLNDGTQA
SSPISDSSQTTTEGPDSAVTPSDSSEIVLDGPDGQYSGMQIGQPRDEGEEAAGLLPDEDV
DAFTDSAVALQQAHLLERLGHSRQPSDSSIDKFVSRDEATEPGDQENKPCRIKGDIGRSA
DDDSAPLIHCVRLLSASFLLTGEKNALVPDRDVRVSVKALALSCVGAAVALHPESFFSKL
YKVPLETTEYPEEQYVSDVLNYIDHGDPQVRGATAILCGTLVYSILSRSRFHVGDWVATV
RTLTGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVMSLCSSSYSEFGLQLITDVL
TLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENIHRGAHHYTGRLKLQERVLNNVVIY
LLGDEDPRVRHVAAASLMRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSH
FSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEALCLLST
AFPVCVWSLGWHCGVPPLSASDEARKSCTVGMATMILTLLSSAWFPLDLSAHQDALILAG
NLLAASAPKSLRSSWTSEEEANPAATKQEEIWPALGDRTLVPMVEQLFSHLLKVINICAH
VLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASVPLSPKKGNEASPASRQSD
TSGPVPANKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVL
SQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDGLSSN
PSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQDHDTSGWFDVL
QKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQ
LVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQI
IGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSM
LLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHIDSHEALGVL
NTLFEILAPSSLRPVDMLLRSMFVTPDTMASVSTVQLWISGILAILRVLISQSTEDIVLS
RIQELSFSPYLISCPIINRLRDGDSNSTPEEQGEGRQVKNLPEETFSRFLLQLVGILLED
IVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAASRLFTADGADSSFYG
LESLNARVRSMVPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPKRRSLSSTKSLCPQMS
GEEEDSDLAAKLGMCNREIVRRGALILFCDYVCQNLHDSEHLAWLLVNHVQDLIGLSHEP
PVQDFISAVHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLMLYVD
KLLCTPLRVLARMVDTLACRRVEMLLAANLQSNMAQLPVEELNRIQEYLQNSGLAQRHQR
LYSLLDRLRLATAPGSCGPSPPVTSHPLDGDGPLALETVNPDKDWYIRLVKSQCWTRSDS
ALLEGAELVNRLPPGDMSAFMMNSEFNLSLLAPCLGLGMREISGGQKSPLFEAARVVTLD
RVTSMVQQLPAVHQVFQPFLPVEPSTYWGKVNDLFGDAVLYRSLTTLARALAQYLLVFSK
LPSHLHLPPEKEKDTVKFVVMTLEALSWHLMHEQIPLSLDLQAGLDCCCLALQLPGLWSV
LSSPEMVTHACSLIHCVRFLLEAIVVQPGDQLLSPERRTNTPKAAREDEVDSNTLNPKYI
TAACGMVAEMVESLPSVLALGHKRNSSTPAFLTSVLKNIIISLARLPLVNSYTRVPPLVW
KLGWAPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINALGWTSRTQFEETWATLLGVLV
TQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPL
KALDTRFGRKLSIIRGIVEQEIQAMVSKRENIATHHLYQAWDPVPSLSPATTGALISHDK
LLLQINPERELGNMSYKLGQVSIHSVWLGNSITPLREEEWDEEEEEEADVPAPSSAPTSP
VNSRKHRAGVDIHSCSQFLLELYSRWILPSSSARRTPIILISEVVRSLLVVSDLFTERSQ
FEMMYLTLTELRRVHPSEDEILVQYLVPATCKAAAVLGMDKAVAEPVSRLLESTLRSSHL
PSKIGALHGVLYVLECDLLDDTAKQLIPVISDYLLSNLKGVAHCVNIHSQQHVLVMCATA
FYLIENYPLDVGPEFSASIIQMCGVMLSGSEESTPSIIYHCVLRGLERLLLSEQLSRLDA
ESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKISPGRTSDPSPAAPDSESVIVAME
RVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVV
YKVFQTLHSTGQSSMVRDWVMLSLSNFTQRAPVAMAVWSLSCFFVSASTSPWVSAVLPHV
ISRMGKLEQVDVNLFCLVATDFYRHQIEEELDRRAFQSVFEVVAAPGNPYHQLLTCLRNV
HKVSTC
NT seq
9381 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaggccttcgagtccctcaagtccttccagcagcag
cagcagcagccgccgccgccacctcagccccctcagccgccgccgcaggcgcagccgccg
ccgcctcagcagcagccgccgccgccgccgcccccgccgccgcccggcccggccgcggcc
gaggagccgctgcatcgaccaaagaaagaactctcagccaccaagaaagaccgtgtgaat
cattgtctgacaatatgtgaaaacatagtggcgcagtctctcagaaattctccagaattt
cagaaacttctgggcatcgctatggaactttttctgctgtgcagtgatgacgcagagtca
gatgtcaggatggtggctgacgaatgcctcaacaaagtcataaaagctttgatggattct
aatcttccaaggttacagttagaactctataaggaaattaaaaagaacggtgctcctcgg
agcctgcgtgctgccctgtggaggtttgctgagctggctcacctagttcggcctcagaaa
tgcaggccttacttggtaaaccttttgccttgcctgactcgaacaagcaaaagacctgag
gaatctgttcaggagaccttggctacagctatacccaaaattatggcttcttttgggaat
tttgcaaatgacaatgaaattaaggttctgttaaaggctttcatagcaaatctgaagtca
agctcccctaccattcggcggacagcagctggctcagcagtgagcatctgtcagcactca
agaaggacgcagtatttttatacctggctactaaatgtactcttaggtttgctagttcct
gtcgaggatgaacactccaccctcctgattcttggagtgctgctcacattgcggtatttg
gtgccattgctacagcagcaggtcaaggacacaagcctgaaaggcagctttggggtgaca
cggaaagaaatggaagtctctccctcgacagagcagcttgtccaggtttacgaattgacc
ttgcgttatactcagcaccaagaccacaatgtggtgactggagcattagaactcctgcag
cagctcttcagaacccctcctccggagctcctgcaagctctgaccacggcaggtggcctt
gggcggctcgctgcggctaaagatgagcccagttgccgaagtcgtagcgggagtattgtg
gaacttatagccggagggggttcttcatgcagccctgtcctttcaagaaaacaaaaaggg
aaagtgctcttgggagaagcagcagccttggaggaggactctgagtcaaggtctgacagc
agcagcccagcctttgcagcctcagtcaagggtgagattggtggtgagctggctgcctct
tcaggggtctccactcctggctctgctagctcagccgctgactctgcgggtcacgacatt
atcaccgagcagccccggtcacagcatacactgcagccagactcagtggatctgactggc
tgtgacttgacgagcgctgccaccgatggggatgaggaggacatcttgagccacagctcc
agccagatcagcgctgtcccgtctgatcctgccatggacttgaatgatgggacgcaggca
tcctcgcccatcagtgacagctcacaaaccaccactgaagggccggattcggccgtgacc
ccttcggacagttctgaaattgtgttagatggtcctgatggccagtattcggggatgcag
atcggacagccgcgggacgagggtgaggaggccgcaggtcttcttcccgatgaagacgtg
gatgctttcacagactccgcagttgcccttcaacaagcacatttgttggaaaggctgggc
cacagcaggcagccctctgacagcagtatagataaatttgtctcaagagatgaagctact
gaaccaggagatcaagaaaacaagccttgccggatcaaaggagacataggacgatctgct
gatgatgattctgctcctctcatccactgtgtccgccttttgtctgcttcgtttttgcta
actggggaaaaaaatgccttagtcccggacagggacgtgagggtcagtgtgaaggcgctg
gccctcagctgtgtgggagctgctgtggcccttcatccagaatctttcttcagcaaactt
tataaagtacctcttgaaaccacggaataccctgaggagcagtatgtctcagacgtcttg
aactacattgaccatggagatccgcaggtcagaggagccacagccattctctgtgggacc
cttgtctactccatcctcagcaggtcccgcttccatgtgggagactgggtggccaccgtt
agaacactgacaggaaatacgttttctctggtggactgcattcctttgctgcagaaaact
ttgaaggatgaatcttctgttacttgcaagttggcttgtacagctgtgaggcactgcgtc
atgagtctttgtagcagcagctatagtgaattcggattgcagctgatcactgatgtgctg
actctgaggaatagttcctattggctggtgaggacagagcttttggaaactcttgcagag
atcgactttaggttggtgagctttttggaggcaaaagcggaaaacatacacagaggggct
catcattacacagggcggttaaaactgcaagaacgagtgctcaataatgttgtcatctat
ttgcttggggatgaagaccccagggtgcgacatgttgctgcagcttcattaatgaggctt
gtcccaaagctgttttataaatgtgaccaaggacaagctgatccagtagtggctgtggca
agagatcaaagcagtgtttacctgaaacttctcatgcatgagacgcagcctccatctcac
ttctccgtcagcacgataaccagaatatatagaggctataacttactaccaagcataaca
gatgtcactatggaaaataacctctcgagagttattgcagcggtttctcatgaactaatc
acatcaaccacgcgagcgctcacatttggatgctgtgaagctctgtgtcttctttcaact
gcctttccagtttgcgtttggagtttggggtggcactgtggagtgccccctctgagtgcc
tcagatgaggccagaaagagctgtactgttgggatggccacgatgatccttaccctgctg
tcgtcagcgtggttcccgttggatctctcagcccatcaagatgctttgattttggctgga
aacttgcttgcagccagtgcccccaaatctctaagaagttcatggacctctgaagaagag
gccaacccagcagccaccaaacaggaagagatctggccagctctgggtgaccggacccta
gtgcccatggttgagcagctcttctcccacctgctgaaggtgattaatatctgtgcacat
gtcttggatgatgtggctcctggaccagcaataaaggcagccttgccatctctaacaaac
cccccttctctaagtccaatccgacgaaagggaaaggaaaaagaaccgggagagcaggct
tctgtaccattgagtcccaagaaaggcaatgaagccagtccagcttctcgacaatctgat
acctcagggcctgttccagcaaataaatcctcatcactgggaagtttctatcatcttcct
tcatacctcaaattgcatgatgtcctgaaagctactcatgctaactacaaggtcaccttg
gatcttcagaacagcactgaaaagtttgggggatttctgcgctctgccttggacgttctc
tctcagattctagaattggcaacactgcaggacattgggaagtgtgttgaagagattctg
ggatatctgaaatcctgcttcagtcgagaaccaatgatggcaactgtttgtgttcaacag
ttgttgaagactctctttgggacaaacttagcctcccagtttgatggcttgtcttccaac
cccagcaagtctcaaggccgagcacagcgccttggctcttccagcgtgaggccaggcttg
taccactactgcttcatggctccatacacccacttcacccaggccttagccgacgccagc
ctgaggaacatggtgcaggcggagcaggatcacgacacctcagggtggtttgatgtactc
cagaaagtgtctacccaactgaagacaaacctcacgagcgtcacaaagaaccgtgcagat
aagaatgctattcataatcacattcgtttatttgagcctcttgttataaaagctttaaaa
cagtacactacaacaacatctgtacagttacagaagcaggttttggatttactggcacag
ctggttcagttacgggttaattactgtcttctggattcagatcaggtgtttattggattt
gtgctgaagcagtttgaatacattgaagtgggccagttcagggaatcagaggcaattatc
ccaaacatctttttcttcctggtattactatcttatgaacgctatcattcaaaacagatc
atcggaattcccaaaatcattcagctctgtgatggcatcatggccagtgggaggaaggct
gtgacacatgccataccagctctgcagcccatagtccatgacctcttcgtattaagagga
accaataaagctgatgcaggaaaagagcttgaaacccaaaaagaggtggtggtgtcaatg
ttactgagactcatccagtaccatcaggtgttggagatgtttattctagtcttgcagcag
tgccacaaggagaacgaagacaagtggaaacggctgtctcgacagatagccgacatcatc
ctcccgatgttagccaaacaacagatgcacattgattctcacgaggcccttggagtgctg
aacactttatttgagatcctggccccttcctccctgcgccccgtggacatgctgttacgg
agtatgtttgtcactccagatacaatggcatctgtcagcactgttcaactgtggatatca
ggaatcctagccattttgagagttctaatttcccagtcaactgaagatattgtcctttct
cgtattcaggagctttccttctctccatatttaatctcctgtccaataattaatagatta
agagatggggacagtaattcaacaccagaagaacaaggtgaagggagacaagtgaagaat
ttaccagaagaaacattttcaaggtttctactacaactggttggcattcttttagaggac
attgttacaaaacagctaaaagtggaaatgagtgagcagcaacataccttctattgccaa
gaactaggcacgctgctgatgtgtctgatccacatcttcaagtctggaatgttccggaga
atcacagcagctgcctctagactcttcactgctgacggcgccgatagcagtttctacggc
ctggagagcttgaatgcgcgggtgcgctccatggtccccacacacccggccctggtgctg
ctctggtgtcagatcctgctgcttgtcagccacactgactaccgctggtgggcagaggtg
cagcagacccccaaacgacgcagtctgtccagcacaaagtccctctgtccccagatgtct
ggagaggaggaggattctgatttggcagccaaacttggaatgtgcaatagagaaatagta
cgaagaggagctctcattctcttctgcgattatgtttgccagaacctgcatgactcagag
cacttagcgtggctccttgtgaaccacgttcaggatctgatcggtctgtcccatgagcct
cccgtgcaggatttcattagtgcggttcatcggaattctgctgccagcggcctcttcatc
caggccattcagtctcgttgtgaaaatctttccactcccaccactctgaagaaaactctt
cagtgtttggaagggatccacctcagccagtcgggtgctgtgctgatgctgtatgtggac
aagcttttgtgtactccgctccgtgtgctggctcgcatggttgacacccttgcttgtcgc
cgggtagaaatgcttttggctgcaaatttacagagcaatatggcccagctgccagtggaa
gaactcaacagaatccaggaataccttcagaacagtgggttagcccagagacaccaaagg
ctctactccctgctggacaggcttcgtctcgccactgcaccaggatcatgtggcccttct
cctccggtcacatcccacccgctggacggggatggacccctggctctggagacagttaat
ccagacaaagactggtacatacgcctagtcaaatcccagtgctggactaggtcagattcc
gcactgctggaaggggcagagctggtgaatcggcttcctcccggggacatgagtgcattc
atgatgaactcggagttcaacttaagcctcttagccccatgcttgggcctgggcatgcgt
gaaatttctggaggccagaagagtcccctatttgaagctgctcgagtggtaactctggac
cgtgtgaccagcatggttcagcagctgcctgctgtccatcaagttttccaaccattccta
cccgtggagcccagtacctactggggcaaagtgaatgatctatttggggatgctgtattg
tatcggtctctgaccactctggcccgagcactggcccagtacctgctggtgttctccaaa
ctgcccagccacttgcaccttcctcctgagaaggagaaggacactgtgaagtttgtggtc
atgacactcgaggccctgtcatggcatttgatgcacgagcagatcccgctgagtctggat
ctccaggcgggcctggactgctgctgcctggctctgcagctgcctggcctctggagtgtg
ctctcctccccagagatggtgacccacgcctgctccctcattcactgtgtccggttcctc
ctggaagccattgtggtgcagcctggggaccagcttcttagtccagaaagaaggacgaac
accccaaaggctgccagagaggatgaagtagattcaaatacactaaaccctaagtatatc
actgcagcctgtgggatggtggcagaaatggtggagtctttgccatccgtgttggccttg
ggtcataaaaggaatagcagcactccagcctttctcacgtcggtgctcaagaacatcatc
atcagcctggctcgcttacccctcgtcaacagctacacacgcgtccctcccctggtgtgg
aaacttggatgggcacccaaaccaggaggggattttggcacagcgttccccgagatcccc
gtggagttcctccaggaaaaggaagtcttcaaagagttcatctaccgcatcaatgcgcta
gggtggaccagccgtacccagtttgaggaaacgtgggccaccctccttggtgtcctggtg
actcagccactcgtgatggaacaggaggagagcccaccagaagaagatacagagaggact
cagatcaatgtcctggccgtgcaggccatcacctccctggtgctgagtgcgatgactgtg
cccgtggccggcaacccagctgtgagctgcttggagcagcagccccggaacaagcccctg
aaggctctcgacaccaggtttgggaggaagttgagcattatcagaggaattgtagagcag
gaaattcaagctatggtttcaaagagagagaatattgccactcatcatttatatcaagcg
tgggaccctgtcccttctctgtctccagctactacaggtgccctcatcagccatgacaaa
cttctgctgcagatcaaccccgagcgggagctggggaacatgagctataagctcggccag
gtgtcaatccactctgtgtggctggggaacagcatcacacccctgagagaggaggagtgg
gacgaggaggaggaggaggaggctgatgtccctgcaccttcgtcagcacccacatctcca
gtcaactccaggaaacaccgggctggggttgatatccactcctgttcgcagtttttgctt
gaattgtacagtcgctggatcctgccgtccagttcagccagaaggacccctattatcctg
atcagtgaagtggttcgatctcttctggtggtctcagacttgttcactgagcgcagccag
tttgagatgatgtacctgacactgacagagctgcggagggtgcacccttcagaagacgag
attctcgttcagtacctggtgcctgccacctgtaaggcagctgccgtcctcggaatggac
aaggccgtggcagagccagtcagccgcctgctggagagcacgctcaggagcagccatctg
cccagcaagattggggccctacatggcgttctgtacgtgctggagtgtgacctcctggat
gacaccgcaaaacagctcatcccagtcatcagtgactatctcctctccaacctcaaagga
gtagcccactgtgtgaacattcacagtcaacagcatgtgctggtgatgtgtgctaccgcc
ttctacctgattgagaactatcctctggatgtagggccagaattctctgcatcaataata
cagatgtgtggggtgatgctgtctggaagtgaggagtccactccatccatcatttaccac
tgcgtcctgaggggcctggagcgcctcctgctctccgagcagctctcccggctggacgca
gaatccctggtcaagctgagtgtggacagagtgaacgtacacagcccacaccgggccatg
gcggccctgggcctgatgctcacctgcatgtacacaggaaaggagaaaatcagtccaggc
agaacctcggaccccagccctgctgccccagacagcgagtcagtgattgtggctatggaa
cgcgtgtctgttcttttcgataggatcaggaaagggtttccttgtgaagccagagtggtg
gcgcgaatccttcctcagtttttagatgacttcttcccgccccaggacgtcatgaacaaa
gtcattggagagtttctgtccaaccagcagccatacccgcagttcatggccactgtagta
tacaaggttttccagactttgcacagcacggggcagtcgtccatggtccgggactgggtc
atgctgtctctctccaacttcacgcagagggccccggttgccatggccgtgtggagtctc
tcctgcttcttcgtcagtgcttccaccagcccgtgggtttcagcagtccttccacacgtc
atcagcaggatgggcaagctggagcaagtggacgttaacctcttctgcctggtggccaca
gacttttacagacaccaaatagaggaggagctggaccgcagggcctttcagtccgtgttt
gaggtggttgcggcaccaggaaacccgtaccaccaactgctgacttgtttgcggaatgtc
cacaaggtctccacgtgctga
DBGET
integrated database retrieval system
