Equus caballus (horse): 100054153
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Entry
100054153 CDS
T01058
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ecb
Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecb03016
]
100054153 (RTCB)
Enzymes [BR:
ecb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
100054153 (RTCB)
Transfer RNA biogenesis [BR:
ecb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
100054153 (RTCB)
Prokaryotic type
tRNA splicing ligases
100054153 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
100054153
NCBI-ProteinID:
NP_001273787
Ensembl:
ENSECAG00000023998
VGNC:
22609
UniProt:
K9K9E5
LinkDB
All DBs
Position
28:complement(31688040..31708231)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataacgatgagctgcagttcttggacaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattgggaatgtggcagccctgcctgggatcgttcat
cgatctattgggcttcctgatgtccattcaggttacgggtttgctattgggaatatggca
gcctttgatatgaatgaccctgaagcagtggtatccccaggtggcgtgggatttgacatc
aattgtggtgtccgcttgctaagaaccaatttagatgaaagtgatgtccagcctgtgaag
gagcagcttgcccaagctatgtttgaccacattcctgttggagtgggctcaaaaggtgtc
atcccaatgaatgccaaagacctggaggaggctttggagatgggtgtggactggtcccta
agagaaggctatgcctgggcggaagacaaggagcactgtgaggagtatggaaggatgctg
caagctgaccccaataaggtctctgcgagggctaaaaaaagaggcctccctcagttgggg
accctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaagaaaatgggcatcgaccataagggacaagtgtgtgtgatgatccacagt
ggaagcagaggattgggccaccaagtagccacagatgcgctggtagctatggaaaaagcc
atgaagagagacaagattatagtcaatgaccgtcagctggcttgtgctcgaatcgcctcc
ccggagggtcaggactacctgaagggaatggcagcggctgggaactatgcctgggtcaac
cgctcctccatgaccttcttaacccgtcaggcttttgccaaagtcttcaacacaaccccc
gatgacttggacctacatgtgatctacgatgtctctcacaacattgccaaagtcgaacag
catgtagtggacggaaaggagcggacactgttggtgcacaggaagggatccacccgggct
ttccctccccaccatcccctcattgctgttgattaccaactcacgggacagccagtgctc
attggtggcaccatgggaacctgtagttatgttctgactggcactgaacagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcattgtccagagcaaaatctcga
cgtaatttagatttccaggatgtgttagacaaattggcagatatgggaattgcaatccgt
gttgcctcacccaaactagttatggaggaggctcctgagtcctataagaacgtgaccgat
gtggtgaacacctgccatgatgctggcatcagtaagaaggccattaaactgaggccgatt
gctgttatcaagggatag
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