Equus caballus (horse): 100054235
Help
Entry
100054235 CDS
T01058
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X3
KO
K13126
polyadenylate-binding protein
Organism
ecb
Equus caballus (horse)
Pathway
ecb03015
mRNA surveillance pathway
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100054235 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
100054235 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100054235 (PABPC4)
03041 Spliceosome [BR:
ecb03041
]
100054235 (PABPC4)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100054235 (PABPC4)
mRNA cycle factors
Stress granule specific factors
100054235 (PABPC4)
Spliceosome [BR:
ecb03041
]
Complex C
Other components
Complex C specific factors
100054235 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
RRM_occluded
RRM_3
ApbA_C
Motif
Other DBs
NCBI-GeneID:
100054235
NCBI-ProteinID:
XP_001503500
Ensembl:
ENSECAG00000009396
VGNC:
50737
LinkDB
All DBs
Position
2:18481143..18496135
Genome browser
AA seq
644 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcagccagcagctaccccatggcctccctgtacgtgggcgacctgcactcg
gacgtcaccgaggccatgctgtatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgccgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccggatcatgtggtctcagagggatccctctttgagaaaatctggtgtggggaac
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttctct
gcttttggaaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgagaa
gctgagcttggagccaaagccaaggaattcaccaatgtttacataaaaaactttggggaa
gaggtggatgatgagagtctgaaagagctattcagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggatttggctttgtgagttatgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatcagtgggaaagtc
atttttgtaggccgtgcacagaagaaagtggaacggcaggctgagttaaaacggaaattt
gaacagctgaaacaggagagaattagtcgatatcagggggtaaatctctacattaagaac
ctggatgacaccattgatgatgagaagttaaggaaagagttttctccttttggatcgatc
accagtgctaaggtaatgctggaggatgggagaagcaaagggttcggctttgtctgcttc
tcatctccggaagaggcaactaaagcagtcactgaaatgaatggacgcatcgtgggctcc
aagccactgtatgttgccctggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtatatgcagcgagtagctgggatgagagcactccctgccaatgccatcttaaatcag
ttccagcctgcagctggtggctacttcgtgccagcagttccacaggctcagggaagacct
ccatattatacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccaatctgggcctcgtcca
actcttcgccatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggtgttccc
acagctgtgcagaacttagcacctcgtgctgctgttgctgccgctgcccctcgggctgtt
gcaccttacaaatacgcatccagtgtccgcagccctcaccctgccatacagcctctgcag
gcaccccagccggcggtccacgtgcaggggcaggagcccctgaccgcctccatgctggct
gcagcacccccccaggaacagaagcagatgctgggagaacgtttgttcccgctcatacag
accatgcattcaaacctggctggaaagattacagggatgctgctggagatcgacaactct
gagctgctgcacatgctagagtcccctgagtcgctccgctccaaggtggatgaagctgtg
gcggttctgcaggctcatcacgccaagaaggaagctgcccagaaggtgggcgctgtcgct
gctgctacctcctag
DBGET
integrated database retrieval system
