Equus caballus (horse): 100055712
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Entry
100055712 CDS
T01058
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100055712 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecb04147
]
100055712 (COL18A1)
00535 Proteoglycans [BR:
ecb00535
]
100055712 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
ecb00536
]
100055712 (COL18A1)
Exosome [BR:
ecb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100055712 (COL18A1)
Proteoglycans [BR:
ecb00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100055712 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ecb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100055712 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
DUF1554
LDL
Motif
Other DBs
NCBI-GeneID:
100055712
NCBI-ProteinID:
XP_023486069
Ensembl:
ENSECAG00000016361
VGNC:
16728
UniProt:
F6XNR9
LinkDB
All DBs
Position
26:41808004..41917526
Genome browser
AA seq
1753 aa
AA seq
DB search
MAPHPSSRLRLLLLLCCLGAARAQLLSLLWPWSTGTKGPSAPPVSVPRGSPSVQSTEDTT
THVAHQDGPTEQGTAPTSRELPPERLEAGLGRASAAPTASTESPENIAGVGAEILNVAMG
IRNFVRLWDNTTPAESSTRAGTATPATPTDLLTLPGPSSASQENGTVLWPSSGAPSSPVT
QRTEAGTSPVPTQPPPSPGTPQALLREPSLPPPSPGRALSSTLGGAPLWGSRPSPGQLQD
LDGEELLPVAARPGQQHRHADVGRHSLHLLPLVTGSLGTALSALSSDSPTELSQIALSAL
IGDSGAWIPHVANSVGPGLANNSSLLGADPLTPAGQPVHNAAGRCLPLPPSLPVCGRLGI
GRSWLPNHLHHVRSEEVQAAARAWGGLLRTHCHRFLAWFFCLLLAPPCGPPPAPPPCRQF
CEVLEDACWSHLDGGGLPVSCASLPAQEDGYCVFIGPAADSARTEVGLLQLLGDPPPPQV
SRVDDPDVGPAYVFGPDASGGQAARDLFPSRFFRDFSLLLHVRPDTAGAGVLFAVTDAAQ
AVVSLGVKLAAVRDGHQDVQLLHAEPGAARTRVAAAFRLPAFAGQWARLALSVDGAAAAL
FVDCEEVQRVPLARAARGVELEPGARVFVAQAGRADPDKFQGMIAELRVRADPHVSPVHC
LEDDDDDDDGASGDFGSGLEEPRERLGEEPGTSLTLGLPDAPPVTSPPLAGSSDVEDSRT
EEIEEETTVSSLGAHTLPGSDPAAATWDGSAWSPGGSLREGGLKGQKGEPGLPGPVGPQG
PAGPAMHSPDAQPIPGPQGPPGPPGPPGKDGAPGRDGEPGDPGEDGRPGDTGPQGFPGTP
GDLGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRPDKLTFIDMEGSGFGGDLETLRGPRG
FPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGREGPPGLPGPPGPPGPPGRDGR
PGGTGQKGSLGEAGPPGPKGNKGDPGPIGAPGENGLAGPPGPAGPPGPPGPPGLPGPPGP
GLAAGFDDMEGSGGPFWSTARGADGPQGPPGLPGVKGDPGPAGPPGTKGEVGADGGPGFP
GLPGREGAAGAQGPKGEKGTQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDRAVASV
PGPEGRPGLAGFPGPAGPKGDLGSKGQQGLPGPKGEKGEPGAVFGPDGGVLTASQKGAKG
EPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASVRFGMKGLPGPPGPP
GPPGLPGTPVYDTNAFLESGRPGPPGLPGHQGPSGPKGDKGEVGPPGPPGQFPLDLLQLE
AEMKGEKGDRGPAGQKGERGEPGAGGFFGSSVPGPPGPPGYPGIPGPKGESIRGQPGPPG
PQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGTMGTSS
GQVRIWATYQTMLDKVPEVPEGWLIFVAEREELYVRVRNGFRRVLLDARMPLPRGTDNEV
AALQPPVVQLHEGNPYPRREVPHSTARPWRADDILASPPRLPDPQPYPGAPHHGSYVHLR
PARPTSSLTHTHQDFQPVLHLIALNSPQSGGLRGIRGADFQCFQQARAVGLAGTFRAFLS
SRLQDLYSIVRRADRASVPIVNLRDEVLFPSWEALFTGSEGRLKPGARIFSFDGRDVLQH
PAWPQKSVWHGSDPSGRRLTESYCETWRTEATAATGQASSLLAGRLLEQKSASCHNAFIV
LCIENSFMTSSSK
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggctccccaccccagcagccgcctccgcctgctgctgctgctttgctgtctcggggcc
gcccgggctcaactgctgagcctcctctggccgtggtccactgggaccaaagggccctca
gccccgccggtctccgtgccccggggcagcccatctgtgcaatccacagaggacaccacc
acgcacgtggcccaccaggatggccccaccgagcaggggacagctcccaccagccgtgag
ctgcccccggagaggctggaggctggcctgggccgggcctccgctgcccccacggcctcc
accgagagcccagagaacatcgccggcgtcggggccgagatcctgaacgtggccatgggc
atccggaactttgtccggctgtgggacaacaccacccccgccgagagctccaccagggcg
gggacggcaacccctgcgacccccacggacctcctcaccctccctgggccttccagcgcc
tctcaggagaacgggaccgtgctctggccaagtagcggggccccaagctctcctgtcacc
cagaggaccgaggccggcacctcgccagtgcccacccagccgcctccctcccctggcacg
ccccaggcactgctcagggagccctcgctgccgccaccgtccccaggtagagctctctcc
tccacgctgggcggggcccctctctggggaagccggccgtccccagggcagctgcaggat
ctggatggtgaagaactcttgcccgtggcagcccgtcccggccagcagcaccgacacgct
gacgtcggcaggcactcgctccatctgctccccctggtgacgggttcgctgggcactgcc
ctctcggctctctcctctgactctcccactgagctgtctcaaatcgcactctcagcttta
attggggacagtggtgcttggattccccacgtggctaattctgtgggacctggtcttgct
aataactcctcgctgctcggggctgacccactgacccctgccgggcagcctgtccacaat
gccgctggccgctgcctgcccctgccgccctccctgcccgtctgcggccgcctgggcatc
gggcgctcctggctgcccaaccacctccaccatgtgcgcagcgaggaggtgcaggccgcc
gcgcgtgcctgggggggcctcctgcggacccactgccaccgcttcctcgcctggttcttc
tgcctgctgctggcccccccctgcggcccgccccccgccccaccgccctgccgccagttc
tgtgaggtcctggaggacgcgtgctggagccacctggacgggggcgggctgccggtcagc
tgtgcctcgctccctgcccaggaggatgggtactgtgtgttcattgggccggctgcagac
agcgcacgcacggaggtggggctcctgcagctgctcggcgaccccccgcccccgcaggtc
tcccgggtggacgaccccgacgtcgggccggcctacgtcttcggcccggatgccagcggc
ggccaggcagcgcgggacctcttcccgagccggttcttccgtgacttctcgctgctgctc
cacgtgcgcccggacacggcgggcgcgggcgtgctcttcgccgtcacggacgcggcgcag
gccgtggtctcgctgggcgtgaagctggcggccgtgcgtgacggccaccaggacgtgcag
ctgctccacgcggagccgggcgcggcccgcacacgcgtggccgccgccttccgcctgccc
gccttcgccggccagtgggcgcgcctggcgctcagcgtggacggtgcggccgccgcgctc
ttcgtggactgcgaggaggtgcagcgcgtgcccctggcgcgggccgcgcgcggcgtggag
ctggagcccggcgcccgcgtcttcgtggctcaggccggacgagcggaccccgacaagttc
caggggatgatcgcggagctgagagtgcgcgcggacccccatgtgagccccgtgcactgt
ctggaggacgacgatgacgatgacgatggggcatccggagacttcggcagcgggctcgag
gagccccgggagcgtctcggggaggaaccgggcacgtccctgacacttggcctccccgac
gctcccccagtcacctcaccacccttggctggaagcagcgacgtggaagattccagaact
gaagaaattgaggaagaaactactgtgtcttcattaggagctcacaccctccccggctca
gatccagccgccgccacgtgggacggcagtgcctggagccctgggggcagcctgcgagag
ggaggcctcaaggggcagaagggggagcctggcctacctggtccagttggtccccagggt
cctgcaggcccggccatgcacagccccgatgcacagcctatccctgggccacagggaccc
cccgggcccccagggcccccagggaaggatggtgcccccggaagggacggtgaaccgggg
gatcccggtgaagatggcagacctggcgacactgggccgcagggcttcccggggacccca
ggagacctgggccccaagggtgagaagggggatcctggtgttgggccaagaggaccccca
ggaccccaagggcctccaggaccaccaggaccctcattcagacctgacaagctgaccttc
attgacatggaggggtctggcttcggcggcgacctggagaccctccggggcccacgaggc
ttccccggcccccccgggcctcctggcgtcccaggcctgcctggagagccaggccgcttc
ggtatgaacagctcagacgtcccaggacctgcaggcctccccggcgtgcctgggcgcgag
gggccccccgggctccccggacccccgggacccccagggcctccaggaagagacgggcgg
ccaggagggaccggccagaaaggcagcctcggtgaagccggccccccaggacctaaggga
aacaagggagaccccggccccattggcgctcctggcgagaacggcttggcaggacccccc
ggaccagctgggccgccggggcctccagggccccccgggctcccggggcccccgggacca
ggactcgccgcagggtttgatgacatggaaggctccgggggacccttctggtcgacagcg
cgaggtgctgacgggccacagggaccgcccggcctgcctggagtcaagggggatcctgga
ccagctgggccaccgggcactaagggagaagtcggagcagatggaggtcccgggttcccc
ggcctccccggcagagagggcgcggctggagcccaggggccaaaaggagaaaaagggacc
cagggagagaaaggcgacccagggaaggacggagtggggcagccaggcctccctggaccc
cctggacccccagggcctgtcgtctacgtgtcggagcaggacagagcagtggccagcgtg
ccaggacccgagggccgccccgggctcgctggctttcccggaccagccgggccgaaggga
gacctgggctccaaaggccagcagggcctcccaggacccaagggcgagaagggtgagccg
ggtgcagtctttggccccgatggcggagtgctgaccgcctcccagaaaggagccaagggt
gagcccggcttccgaggacccccggggccatacggacggcctgggcacaagggagagatt
ggcttccccggacggccgggtcgccccgggatgaacggcttgaaaggggagaaaggggag
ccaggagacgccagcgtcaggtttggtatgaagggtctgcctggccccccggggccccca
gggcccccaggccttcctgggactcctgtctacgacacgaacgcgtttttggagtctggc
cgccctggacctccaggattgccagggcaccagggaccttctggaccgaagggtgacaaa
ggagaagtgggtccccctggaccacccgggcagttcccgttggacctcctccagctggag
gctgaaatgaagggggagaagggtgaccgagggcctgccggacagaaaggtgaaaggggc
gagcccggagctggcggattcttcggctccagtgtgcccggcccccccggcccaccgggc
taccctgggattccgggtcctaagggagagagcatccgaggacagcctggcccacctgga
cctcagggaccccctggcatcggctatgaaggacgccaggggcctcccggaccccctggt
cccccaggccccccagggcccccttcctttcctggcccttacaggcagaccatcagcgtt
ccaggccctccaggcccgcctgggcccccaggaccccccggcaccatgggcacctcctca
gggcaggtgaggatctgggccacgtaccagaccatgctggacaaggtgcccgaggtgccg
gagggctggctcatcttcgtagccgagagggaggagctgtacgtccgcgtccggaacggg
ttccggagggtgctgctggacgcccggatgcccctcccccgcgggacggacaacgaagtg
gccgccttacagccccccgtggtgcagctccacgagggcaacccgtacccccggcgggag
gttccccactccacggcacgaccctggcgggcggacgacatcctggccagccccccacgt
ctgccggacccccagccctaccctggagccccgcaccatggctcctatgtgcacctccgg
ccggcgcgccccaccagctcactcacccacacccaccaggactttcagccggtgctccac
ctgatcgcactcaacagcccgcagtcgggcggcctgcgcggcatccgcggcgcggacttc
cagtgcttccagcaggcgcgcgccgtggggctggccggcaccttccgcgccttcctgtcc
tcgcggctgcaggacctctacagcatcgtgcgccgtgctgaccgtgccagtgtgcccatc
gtcaacctcagggacgaggtgctgttccccagctgggaggccttgttcacgggctccgag
ggccggctgaagcccggggcccgcatcttctctttcgatggcagagacgtcctgcagcac
cccgcctggccccagaagagcgtgtggcacggctcggaccccagtgggcgccggctgacc
gagagctactgcgagacgtggcggaccgaggccacggcagccacaggccaggcatcctcg
ctgctggcgggccggctgctggagcagaaatccgccagctgccacaacgccttcatcgtc
ctctgcatcgagaacagcttcatgacctcctcctccaagtag
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