Equus caballus (horse): 100056083
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Entry
100056083 CDS
T01058
Symbol
COL16A1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100056083 (COL16A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100056083
NCBI-ProteinID:
XP_023490340
Ensembl:
ENSECAG00000024119
VGNC:
16726
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Position
2:24966357..25016989
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AA seq
1624 aa
AA seq
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MWASWAPGLWLLGLWATCSRGTDTGGQCPPSQQEGLKLEYRSDLSTNVTGFNLIHRLNLL
KTSAIKKIRNPKGPLVLRLGATALTQPTRRVFPRGLPDEFALVLTLLLKKHTHQSTWYLF
QVTDGDGYPQISLEVNSRERSLELRARGQDGDFVSCVFPVPQLFDLRWHKLVLSVAERVA
SVHIDCTSASSQPLGLRRPVQPVGHVFLGLDSEQGKPVLFDLQQAHIYCDPELVLEEGCC
EIVPGGCPQETSKARRDTQNNELIEINPQTEGKVYTRCFCLEEPQSSKVDTHLTGRISQK
AERGTQAHRETEAHECPPCVPGAQESNVTIGPSGPKGGKGERGLPGPSGSKGEKGARGND
CVRISPDAPLQCAEGPKGEKGEAGALGPSGHPGSTGQKGQKGEKGDEGIKGLPGKPGRDG
RPGEICVMGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGRGLPGTPGDPGGPAGPKGDKG
SSGAPGKEGPGGKPGKPGVPGLKGEKGDPCEVCPTLPEGFQNFMGLPGKPGPKGEPGDPA
PAREVLGAAGQKGDRGDPGIQGLKGEKGESCLSCSLAVGAQHLEPSTGAKGDVASPGFGL
PGLPGKVGAPGPTGLKGEKGDFGEAGPAGSVGPPGPVGPAGIKGEKGEPCELCPALSEPQ
DGAGHMVALPGPPGEKGEPGLPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGSMGQP
GLSGEPGVRGPTGPKGEKGDGCTACPSLQGALTNIAGLPGKPGPKGEPGPEGVGRPGKPG
KPGLPGVQGPPGLKGTQGEPGPPGMGVQGPEGEPGAQGLPGVQGLPGPRGPPGPTGQKGA
KGFPGVKGAIGPVGPPGASVSGPPGAEGQRGQTGLPGARGMPGEKGSQGEKGEAGECSCP
SRDLVFSGMPGAPGLWMGSSWQPGPQGPPGVPGPPGPPGVPGLQGVPGNNGLPGQPGLTA
ELGSLPIEQHLLKSLCGDCVQGQTALPAALLEKGEKGDRGIPGVPGFDSCARCFAERERP
RAEEARGDNNEGDPDCVGSPGRPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVG
SPGLPGLQGERGLRGPTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGAPGEKGESG
PPGSEGLPGPVGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPG
PQAEKGSEGMRGPSGMPGPPGPPGSPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMG
PPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPG
QPGPAGISVVGLKGDRGPTGERGLLGLPGQPGPPGHPGPPGEPGADGAAGKEGPPGKQGL
YGLPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAGS
PGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMVAAPGRPGPPGK
DGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQ
GPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCSPADCFGAMPMEQQYPPMKNMK
GPFG
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgtgggcatcttgggctcctggcctgtggctgcttggtctctgggccacctgcagccgt
ggaacagatacaggtgggcagtgcccgccttcacagcaagaagggctcaagttggaatac
agaagcgacttatcgaccaacgtgactggcttcaacctcatccaccgactcaacctcctg
aagacatctgccatcaagaagatccgcaaccccaaggggcccctcgtcctgcgactgggg
gcgaccgccctcacccagcccacacgacgagtattccctcggggcctccccgatgagttt
gccctggtgctgacgctgttgctgaagaaacacactcaccagagcacgtggtatttattt
caagtgaccgatggagatgggtacccacagatttccctggaagtcaatagccgagagcgg
agcctggagctccgggcccggggccaagatggcgactttgtgtcctgcgtcttcccagtg
ccccagctcttcgacctgcgttggcacaagctggtgctgagtgtggcggaacgcgtggcc
tctgtgcatatagactgcacctcagcctcctcccagcccctggggctccggcgacccgtg
cagcccgtgggccatgtctttctgggcttggattctgagcagggcaaacctgtattgttt
gaccttcagcaggcgcacatctactgtgacccagagctcgtgctggaggagggctgctgc
gagatcgtaccgggcgggtgtccccaggagacctccaaggcccgcagggacacccagaac
aatgagctcatcgagatcaatccacagacagagggcaaggtctacacccgctgcttctgc
ctggaggagcctcaaagcagcaaggtggatacccatctgacaggaagaatcagccagaag
gcagaaaggggaacccaggcccatcgggagacagaagcccatgagtgcccaccttgtgtc
cctggtgcccaggagagcaatgtcacaattggtccctctggacccaagggagggaaaggt
gagcggggcctgcctggtccatcaggatccaagggagagaagggagcccggggcaatgac
tgtgtccgaatctccccggatgccccacttcagtgtgcagaaggcccgaagggagagaag
ggggaggcaggagccttgggaccctcaggacacccaggctccacaggccagaagggccag
aaaggcgagaagggagacgaaggcatcaagggcttgccggggaagccaggccgagatggc
cggccaggggagatctgcgtcatggggcccaaagggcagaagggagaccctggctttgtt
gggcctgaggggctggcaggggaacctggaccccccggcctccctgggccccctgggaga
ggacttcctgggaccccgggggacccaggtggccctgcaggccctaagggagacaagggc
agctccggggcaccaggaaaggaaggtcctggtgggaaacctgggaagcctggggtgcca
gggctgaagggagagaagggtgacccctgtgaagtgtgcccaacgctgcctgaagggttc
cagaacttcatgggcctccctggaaagccaggccccaagggggaaccgggtgatcctgca
ccagccagggaggtcctgggagctgctggacaaaaaggtgatcggggagaccctggcatc
caaggcctcaaaggagagaagggggagtcctgcctgtcctgcagcttagctgtaggggcc
cagcatcttgagccctctacaggggccaaaggagacgtggcctcccctggcttcggtttg
ccaggccttccggggaaagttggggctccggggccaacagggctaaaaggagagaagggt
gatttcggggaggcagggccagccggcagtgtggggcccccagggccggtgggaccagca
ggcatcaaaggagagaagggggagccttgtgagctgtgcccagccctgtccgagcctcag
gatggagccggccacatggtggccttgcctggccctcctggagagaaaggagagcctggg
cttccaggcttcggtctaccaggaaaacagggcaaggctggagagcgtggattgaagggg
cagaagggtgatgctgggaatccaggagatcctggaacgccgggcagcatgggtcagccg
ggactgtcaggagagcctggggttcggggccccacagggccaaaaggcgaaaagggcgat
ggctgcactgcctgccccagcctgcagggggcgttgaccaacattgcgggactgcccggg
aagcctggccccaaaggagagccgggccctgaaggtgtgggccggcctggtaaaccgggc
aagcctggtctaccaggagttcaagggcccccaggactgaagggcacacagggagagcct
gggcctccaggaatgggagtccaagggcccgagggggagcctggagcccagggtttgcct
ggcgttcaggggcttccaggacctcggggaccacctggccccactggacagaagggagcc
aagggatttccaggggtgaagggagccattggacctgtgggacctcctggtgccagtgtc
tctgggcctccgggcgctgaggggcagcgaggacagactggccttccaggagccagaggg
atgccaggtgaaaagggatcccagggagagaagggcgaggcgggggagtgctcctgcccc
tccagagacctggtcttctctggcatgccgggtgctccgggactttggatgggcagctcc
tggcagccgggcccgcagggtcctcccggtgttcctggaccaccaggcccccctggagtg
cctgggctgcagggagtacctggaaacaacggcttgccaggacagcctgggctgactgcg
gagctggggtccttacccattgaacagcacctcctgaagagcctctgcggggactgtgtc
caggggcagacggccctcccagcggcccttctggaaaaaggagagaagggagaccggggc
atccccggcgtgccaggctttgacagctgtgcccggtgcttcgcagagcgggagcgcccg
agagccgaggaggcccggggagacaacaatgagggagatccagactgtgtcgggagccct
ggccggcctggtcctccgggactgcctggccagagaggagaagagggtccacctggcatg
aggggctccccgggtcctccaggccctattggccccccaggttttcctggtgctgttggc
tcccccggattgcctggtcttcaaggagagcgaggcctcaggggcccgacaggggagaaa
ggggaaccgggtcctccagggcaacctggctacccaggtgccatgggccccccaggactg
cctggcatcaagggagagcgtggctacgctggggccccaggagagaagggggaatcgggg
ccgccaggatccgaaggcctccctggtcccgtaggcccagcgggtccccgaggagagcga
ggaccccaagggaactcgggtgagaagggtgatcagggatttcaaggccagccaggcttt
ccaggccctccgggtccccctggattcccaggcaaagctggagcacctggaccacccggc
ccccaagcagagaagggcagtgaaggaatgcgaggcccatcaggcatgcctggtccccct
gggccaccaggatctcctgggattcagggccctgctggcctggatggtctggatggaaag
gatggcaagcctggcttgaggggggaccctggtcctgctggcccgcctggactcatggga
cccccgggcttcaaggggaaaacaggacatcctggccttccagggcccaagggtgactgt
ggaaaaccaggccccccaggcagcagtggccggccgggagcagagggtgagcccggtgcc
atgggaccccagggaagacccggcccccccggccatgttgggccaccggggcctcccggc
cagccaggcccagctgggatctctgtagtgggcctgaaaggagaccggggacccactgga
gaaaggggccttttaggccttccaggccagccgggcccacctggacaccctgggcccccg
ggtgaacctggtgccgatggtgcagctggcaaagagggaccacctggaaaacagggactc
tatggacttcctggtccaaagggtgatccgggaccttcaggacagaagggccaggcagga
gagaagggaagagctggcatgcctggtgggcccggcaagagtggctccatggggcctgtt
gggccaccgggtcccgcaggagagagaggccaccctggatctccggggcctgcagggagc
cctggattgcccggggtgcctggctccatgggagacatggtgaattatgatgaaatcaag
aggttcatcagacaagagatcattaaaatgttcgatgagaggatggcttactacacctcc
aggatgcagttccccatggagatggtggcagctccaggacgaccggggcccccagggaag
gacggtgctccaggccggccaggcgctccaggatcacctgggctccctggtcagattggc
agagaaggacggcagggcttgccaggagtgagaggattgcccggtaccaaaggtgaaaag
ggggacattggtattggcatcgcaggagaaaatggtctccctggtcccccaggtcctcaa
ggtcctccagggtatggcaagatgggggcaactggaccaatgggccagcaaggcattcct
ggcatccctggtcccccaggccccatgggccagccaggcaaggctggccactgtagcccc
gctgactgctttggggccatgccaatggagcagcagtacccacccatgaaaaacatgaag
gggccttttggctga
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