Equus caballus (horse): 100056088
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Entry
100056088 CDS
T01058
Symbol
VIM
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
ecb
Equus caballus (horse)
Pathway
ecb04820
Cytoskeleton in muscle cells
ecb05169
Epstein-Barr virus infection
ecb05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100056088 (VIM)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100056088 (VIM)
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
100056088 (VIM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100056088 (VIM)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ecb04812
]
100056088 (VIM)
04147 Exosome [BR:
ecb04147
]
100056088 (VIM)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
100056088 (VIM)
Cytoskeleton proteins [BR:
ecb04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
100056088 (VIM)
Exosome [BR:
ecb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100056088 (VIM)
Exosomal proteins of other cancer cells
100056088 (VIM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
TolA_bind_tri
TPR_MLP1_2
DUF573
RBD-FIP
Laminin_II
Sec10_N
DUF4515
GAS
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
100056088
NCBI-ProteinID:
NP_001230074
LinkDB
All DBs
Position
29:complement(19280505..19288472)
Genome browser
AA seq
466 aa
AA seq
DB search
MSTRSVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSSSRTLYSSSPSGV
YATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFASYIDK
VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE
DIMRLREKLQEEMVQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEE
EIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSE
AANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQD
TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS
LNLRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcacc
gcgagtcggccgagctccagccggagctacgtgaccacgtccacccgcacctacagcctg
ggcagcgcgctgcgccccagctccagccgcaccctctactcctcgtccccgagcggcgtg
tacgccacgcgctcctcggccgtgcgcctgcggagcagtgtgcccggcgtgcggctgctg
caggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgc
accaacgagaaggtggagctgcaggagctgaatgaccgcttcgccagctacatcgacaag
gtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggc
cagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcag
gtggaccagctcaccaacgacaaggcccgtgtcgaggtggagcgcgacaacctggcggag
gacatcatgcggctccgggagaagttgcaggaggagatggttcagagagaggaagccgag
agcaccctgcaatccttcagacaggatgttgacaatgcttctttggcacgtcttgacctt
gagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcacgaagag
gaaatccaggagctgcaggctcagattcaggaacagcatgtccaaattgatgtggatgtt
tccaagcctgacctcacggctgccctgcgggacgttcgtcagcagtatgaaagcgtggct
gccaagaaccttcaggaggccgaggaatggtacaagtccaagtttgccgacctctctgag
gctgctaaccggaacaatgatgccctgcgtcaggcgaagcaggagtcaaatgagtaccgg
agacaggtgcagtccctcacctgcgaagtggatgcccttaaaggaactaatgagtctctg
gaacgccagatgcgtgaaatggaagagaactttgctgttgaagctgctaactaccaagac
actattggccgcctgcaggatgagattcagaacatgaaggaagaaatggcgcgtcacctt
cgggaataccaagacctgctcaatgttaagatggctcttgacattgagattgccacctat
aggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcttcc
ctgaacctgagggaaaccaatctggaatcactccctctggttgacactcactcgaaaagg
acccttctgattaagacggttgaaactagagatggacaggttatcaacgaaacttctcag
catcatgatgatcttgagtga
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integrated database retrieval system
