Equus caballus (horse): 100056546
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Entry
100056546 CDS
T01058
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ecb
Equus caballus (horse)
Pathway
ecb04612
Antigen processing and presentation
ecb05145
Toxoplasmosis
ecb05152
Tuberculosis
ecb05164
Influenza A
ecb05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
100056546 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
100056546 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
100056546 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
100056546 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
100056546 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ecb01001
]
100056546 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ecb04054
]
100056546 (CIITA)
Enzymes [BR:
ecb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
100056546 (CIITA)
Protein kinases [BR:
ecb01001
]
Serine/threonine kinases: Other
TAF1 family
100056546 (CIITA)
Pattern recognition receptors [BR:
ecb04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
100056546 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_14
LRR_9
DUF6300
Motif
Other DBs
NCBI-GeneID:
100056546
NCBI-ProteinID:
XP_014585603
Ensembl:
ENSECAG00000023534
VGNC:
16550
LinkDB
All DBs
Position
13:complement(34660763..34751968)
Genome browser
AA seq
1206 aa
AA seq
DB search
MNQFQTILTHVRMLLSSHQPSEVQALLDSMLEEELLSREYYSALLHEPDGEALARKISLT
LLEKRDLNLTLLGWGWSGLEAPAAEWDPSYKDPGGSGPCAAMELGPLEGGYLELLNSNAD
PLHLYHFYDHVDLAGEEEIELCSEPDTDTINCEQFSRLFDIEGDEETREAYANIAELDQY
VFQDSQLDGLSKDIFVEHIGLEEMIGESVEAPEEVGQKRPFPEELPVDRKHRKLAEPPAV
PMVTGTFLVGPVSDPSTLPCPSPAALFNKEPASSQTRVEETVLMPAPPSTSLLSCLSLPA
GPIQIVPTLPTLPQGLWQISGAGTGVSGVFIYQGELPQASQAPPPSSPAVHSLPKSPDRP
GSTSPFAPSAADLPGMPEPALTSRAHVTEDQVSPTRCQAAHEGSSKPPKWPESVEKFYRS
LQDRYQAEPAGPDGILVEVDLVRARLERSSSKSLERELATPDWTERQPACGGLAEVLLAA
GDRRRPRETQLIAVLGKAGHGKSCWARAVSRAWACGRLPQYDFVFFFPCRCLDRPGDAYR
LQDLLFSLGPQPLPVDDEVFSHILRRPDRVLLILDAFEELEAQDGFLHSVCGPVSPEPRS
LGGLLAGLFQRKLLRGCTLLLTARPRGRLAQSLSKADALFEMAGFSAEQAETYVRCYFEL
SGDSEHQERALELLRGQPFLLGHSHSPTVCRAVCQLSEALLERGDEAELPSTLTGLYVGL
LSPAARDSPPGALVALARLAWELGRQHHGTVREGQFPSAEVTAWAVAKGLVQPIPGAPEP
ELAFSSFLLQCFLGAVWLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLVFQ
PRARCLGALAGPEGTTLADRKQKALTRYLKRLQPGMLRAGRLLELLHCAHEALDAGLWQH
VVQGLPACLSFLGTRLTPPDTHVLGSALEAAGRDFSLDLRSTGIDPSGLGNLVGLSCVTR
FRAALSDTVGLWESLQQRGEAKLLRAAEEKFTIEPFKAESMKDVDDLGNLVQIQRTRSSS
EDVAGDLPAVRDLKKLEFALGPVLGPQAFPRLVRILEAFSSLQHLDLDSLSENKIGDEGV
AQLSATFPQLKALETLNLSQNSITDVGACKLAEALPALAMSLLRLSLYNNCICDVGAESL
AHVLPDMVSLRVLDVQYNKFTAAGAQQLAASLRKCPHVETLAMWTPTIPFGVQEHLQQLD
SRISLR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagttccagaccatcctgactcatgtccggatgctgctgtccagccatcagcca
agtgaggtccaggccctcctggacagcatgctggaagaggagcttctctccagggagtac
tacagcgccctgctccatgagccggatggtgaggctctggccaggaagatctccttgact
ctgctggaaaaaagagacctgaacttgaccctcttgggatggggctggagtgggctagag
gctccagcggccgagtgggaccccagctacaaggaccctggtggcagtggaccgtgtgcc
gccatggagttggggccgctggaaggcgggtacctggagcttctcaacagcaatgctgac
cctttgcatctctaccacttctatgaccatgtggacttggctggagaagaagagatcgag
ctctgctcagaacccgacacggacaccatcaactgcgaacagttcagcaggctgtttgac
atagaaggtgatgaagagaccagagaggcttatgccaatatcgcggaactggaccagtac
gtgttccaggactcccagctggacggtctgagcaaggacatcttcgtcgagcacataggc
ttggaagaaatgatcggtgagagcgtggaagcgcccgaggaagtggggcagaaaagaccc
ttcccagaggagctgccggtggaccggaagcacaggaagctagccgagccccccgccgtg
cccatggtgactggcactttcctggtggggccagtgagtgacccctcgactctgccctgc
ccgtcgccggctgctctgtttaacaaggagccagcatccagccagacccgggtggaagaa
accgtcctgatgcccgcgcccccctccacttccttgctgagctgtttgagtctccccgcc
gggcccattcagatcgtccccactctccccactctgccccaggggctctggcaaatctca
ggggctgggaccggggtctctggtgtattcatctaccaaggcgagctgccccaggctagc
caagcgcccccgcccagcagcccagctgtccacagcctcccgaagtccccagaccggcct
ggttccaccagcccctttgccccatcggcagctgaccttcctggcatgcccgaaccagcc
ctgacctcccgtgcccacgtgaccgaggaccaggtgtcgcccacccgatgccaggcagct
cacgagggctccagcaagcctccaaaatggcccgagagcgtggagaagttctaccgctcg
ctccaggacaggtaccaggccgagcccgcaggcccggacggcatcctggtggaggtggac
ctggtgagggcgcggctggagcggagcagcagcaagagcttggagagggagctggccacc
ccagactggacagagcggcagccggcctgcgggggtctggccgaggtgctgctggctgcg
ggcgaccgccggcggccgcgtgagacgcagctgattgccgtgctcggcaaagcaggacat
gggaagagttgctgggcccgggcagtgagccgggcctgggcctgcggccggctgccgcag
tatgactttgtcttcttcttcccctgccgctgtctggaccgtcctggggacgcctaccgc
ctgcaggacctcctcttctccctgggcccgcagccactgcccgtggacgatgaggtcttc
agtcacatcttaaggaggccggaccgcgtgctgctcatcctggatgccttcgaggagctg
gaagctcaggatggcttcttgcacagcgtgtgcggacctgtgtccccggagccgcgctcc
ctcggggggctgctggcgggcctgttccagcgcaagctgctgcgtggctgtaccctcctg
ctcacggcccggccccggggccgcctggcccagagcctgagcaaggctgacgccctgttc
gagatggccggcttctcagccgagcaggccgagacctacgtgaggtgctacttcgagctt
tcgggggacagtgaacatcaggagagagccctggagctcctgcggggccagccgtttctg
ctcggtcacagccacagccccacggtgtgccgggccgtgtgccagctctctgaggccctc
ctggagcggggcgacgaggccgagctgccctccacgctcaccggactctacgttggcctt
ctcagcccggcagcccgtgacagccccccaggggcgctggtggcgctggccaggctggcc
tgggagctgggccgccagcaccacggcaccgtgcgcgagggccagttcccgtcggcggag
gtgacggcctgggctgtggccaaaggcttggtgcagcccatcccgggggccccggagccc
gagctggctttctccagcttcctcctgcagtgcttcctgggggccgtgtggctggctctg
agcggcgagatcaaggacaaggagctgccgcagtatttggcgctgaccccaaggaagaag
aggccctatgacaactggctggagggcgtgccgcgctttctggccgggctggtcttccag
cctcgcgcccgctgcctgggagccctggcggggcccgagggcaccacgctggcggacagg
aagcagaaggcgctcaccaggtacttgaagcggctgcagccggggatgctgcgcgcaggg
cggctcctggagctgctgcactgcgcccacgaggccctggacgccgggctctggcagcac
gtggtgcaggggctccccgcctgcctctccttcctgggcacccggctcacgcctcccgat
acccacgtgctgggcagcgccctggaggcggccggccgagacttctccctggacctccgc
agcactggtattgacccctctggactggggaacctcgtgggactcagctgtgtcacccgt
ttcagggccgccttgagtgacacggtggggctgtgggagtccctacagcagcgtggggag
gccaagctactccgggcagcggaggagaagttcaccatcgaacctttcaaggctgagtcc
atgaaggatgtggatgacctgggcaacctcgtgcagatccagaggacaagaagttcctcg
gaagatgtggctggggatctccccgctgtccgggacctgaagaagctggagtttgcgctg
ggccccgtcctgggcccccaggctttccccaggctggtgaggatccttgaggccttttcc
tcccttcagcatctggacctggactcgctgagcgagaacaagatcggggacgagggcgtc
gctcagctctcggccaccttcccgcagctgaaggccctggagacgctcaacctgtcccag
aacagcatcaccgacgtgggcgcctgcaagctcgccgaggccctgcccgcgctggccatg
tccctcctcaggctgagcttgtacaataactgcatctgcgacgtgggagccgagagcctg
gcgcacgtgcttccagacatggtgtcgctgcgggtgttggatgtccagtacaacaagttc
acggccgccggggcccagcagctcgcggccagcctgaggaagtgcccgcacgtggagacg
ctggcgatgtggacacccaccatcccatttggcgtccaggaacacctccagcagctggac
tcccggatcagcctgagatga
DBGET
integrated database retrieval system
