Equus caballus (horse): 100056839
Help
Entry
100056839 CDS
T01058
Symbol
COL21A1
Name
(RefSeq) collagen alpha-1(XXI) chain isoform X1
KO
K16629
collagen type XXI alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100056839 (COL21A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
VWA_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100056839
NCBI-ProteinID:
XP_014589998
Ensembl:
ENSECAG00000009887
VGNC:
16732
LinkDB
All DBs
Position
20:complement(54291647..54465931)
Genome browser
AA seq
957 aa
AA seq
DB search
MAHHITFLWIVLVLLLQNSVLAEDGEVRSSCRTAPTDLVFILDGSYSVGPENFEIVKKWL
VNITRNFDIGPKFIQVGVVQYSDYPVLEIPLGSHDSGENLMAAMESIHYLGGNTRTGKAI
QFALDYLFAKSSRFLTKIAVVLTDGKSQDEVKDAAEAARESKIILFAIGVGSETEEAELR
AIANKPSSTYVFYVEDYIAISKIREVMKQKLCEESVCPTRIPVAARDEKGFDILLGLDVK
KKVKKRIQLSPTKIKGYEVTSKVDLSEFTSNVFPEGLPPSYVFVSTQRFKVKKMWDLWRI
LTIDGRPQIAVTLNGVDKTLLFTTTSIINGSQVVTFADPRVKTLFDEGWHQIRLLVTEQD
VTLYIDDLQIENKPLHPVLGIFISGQTQIGKYSGKEETVQFDVQKLRIYCDPEQNNRETA
CEIPGFNGECLNGPSDVGSTPAPCMCPPGKPGLQGPKGDPGQPGNPGYRGQPGQDGKPGY
QGIAGSPGVPGSPGIQGARGPEGYKGEPGRDGEKGDRGLPGFPGLDGMPGSKGEMGPKGE
KGSPGFYGKKGAKGEKGIAGFPGLPGRAGEPGRHGKDGLMGSPGYKGEAGPPGAPGQDGS
RGEPGIPGFPGNQGLMGQKGEIGPPGPVGKKGAPGIPGLMGSIGSPGQPGTPGSKGSKGE
PGPQGIPGASGLKGDQGAVGPPGEPGYLGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGI
PGQQGIPGHHGAKGERGDKGEPGVRGAIGPKGESGLDGLMGPAGPQGQPGETGPQGPPGL
DGKPGREFSEQFIRQVCTDVLRAQLPVLLQSGRIQNCDHCQSQHGSPGIPGPPGPIGPEG
PRGFPGLPGRDGVPGLVGAPGSPGARGLKGLPGRNGAKGSQGFGYPGEQGPPGPPGPEGP
PGISKEGPPGDPGFPGKDGDHGKPGIQGQPGPPGICDPSLCFSVIVGRDPFRKGPNY
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggctcaccatattacatttctttggatagttttggtcctgcttcttcagaattctgta
ttagctgaagatggggaagtaagatcaagttgtcgtactgctccgacagatttagttttc
atcttagatggctcttacagtgttggcccagaaaactttgaaatagtgaagaagtggctt
gtcaacatcacaagaaactttgacataggaccgaagtttattcaggttggagtggtccag
tatagtgactaccccgtcctggagattcccctcggaagccatgattcgggagagaatctg
atggccgcgatggaatccatacactacttaggaggaaacacaaggactggaaaggccatc
cagtttgcacttgattacctttttgccaagtcctcaagatttctgactaagatagcggta
gtacttacggatggtaaatcccaagatgaagtcaaggatgcagcagaagcagcaagagaa
agtaaaataatattatttgctattggagttggttcagaaacagaagaggcagaactcaga
gctattgccaacaagccttcatctacttacgtgttttatgtggaagactatatcgcaata
tccaaaataagggaggtgatgaagcagaaactttgtgaagaatctgtctgtccaacacga
attccagtggcagctcgcgatgagaaagggtttgatattcttttaggcttggatgtaaag
aaaaaggttaagaaaagaatccagctttcaccaacaaagataaaaggatatgaagtaaca
tccaaagttgatttatcagaattcacaagcaatgttttcccagaaggtcttcctccatcg
tacgtatttgtctccactcagagatttaaggtgaagaaaatgtgggacttatggagaatt
ttgaccatcgatggaaggccacaaattgcagttaccttaaatggtgtggataaaacatta
ttatttacgacgaccagcataattaatggctcacaagtggtcacttttgctgaccctcga
gttaagacattatttgatgaaggctggcatcaaattcgtctcttagtaacagaacaggat
gtaactctgtatatcgatgatctacaaattgaaaacaagcccttacatccagttttaggg
atctttatcagtgggcaaacccaaattggaaaatactctgggaaagaagaaactgttcag
tttgacgtccaaaagttgcgaatctactgtgacccagaacagaacaaccgagagacagca
tgtgagattcctggatttaatggtgagtgcctcaatggacccagtgacgtgggttccact
ccagctccctgtatgtgtcctccaggaaaaccaggacttcaaggtcccaaaggtgatcct
ggacagcctgggaaccctggctaccgtggacagcctggtcaagatggtaagcctggatat
cagggaattgcaggatcaccaggtgttccaggatccccaggaatacaaggagcacgagga
ccagaaggttacaaaggagaaccagggagagatggtgaaaagggtgaccgtggacttcct
ggttttcctgggcttgatggaatgccaggatcaaagggtgaaatgggccccaagggagaa
aaaggatcacctggattttatggcaaaaagggtgccaaaggcgaaaagggcattgctggt
tttcctggccttcctggacgtgctggagagccaggaagacatggaaaggatggattaatg
ggtagtcctggttacaagggagaagcaggacctcccggggcaccagggcaggatggatca
cggggagagcctggaattccaggatttcctggaaaccaaggattgatgggacaaaaggga
gaaattgggcctccaggaccagtgggaaaaaaaggagctccggggatacctggtttgatg
ggaagtattggctcaccgggtcagcctggaacaccaggatctaagggcagtaaaggagaa
cctggacctcaggggattcccggggcttctgggctcaagggagaccaaggagcagtgggg
cccccaggagaaccaggatacctgggtttacctggaattcaaggaaaaaagggggacaaa
ggaaatcaaggtgaaaaaggcattcagggtcaaaaaggagaaaatggaagacaaggcatt
ccagggcaacagggaattccagggcatcatggtgcaaaaggagagagaggtgacaaggga
gaacctggtgtcagaggtgctattggaccaaaaggagaatctgggctggatggcctgatg
gggcctgcgggtccccaggggcaacctggggaaacgggtcctcagggccctccaggattg
gatgggaagcctgggagagaattttcagaacagtttattcgacaagtttgcactgatgta
ttaagagcccagctaccagtcttacttcagagtggaagaattcaaaactgtgatcattgc
cagtcccagcatggctcccccggcattcctgggccacctggtcccataggcccagaaggt
ccccgaggatttcccggtttgccaggaagagatggtgttcctggattagtgggtgctcct
ggaagcccaggtgctagaggattaaaaggcctaccaggaagaaatggggcaaaggggagc
caagggtttgggtaccctggagaacaaggtcctcctggtcccccaggtccagagggcccc
cctggaataagcaaagaaggtcctccaggagacccgggtttcccaggcaaagatggagat
catggaaaacctggaatccaagggcaaccaggcccccctggcatctgtgatccatcgcta
tgttttagtgtaattgtcggaagagatccatttagaaaaggaccaaactattag
DBGET
integrated database retrieval system
