Equus caballus (horse): 100057832
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Entry
100057832 CDS
T01058
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
ecb
Equus caballus (horse)
Pathway
ecb04120
Ubiquitin mediated proteolysis
ecb04137
Mitophagy - animal
ecb04141
Protein processing in endoplasmic reticulum
ecb05012
Parkinson disease
ecb05014
Amyotrophic lateral sclerosis
ecb05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100057832 (PRKN)
04120 Ubiquitin mediated proteolysis
100057832 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
100057832 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
100057832 (PRKN)
05014 Amyotrophic lateral sclerosis
100057832 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
100057832 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecb04131
]
100057832 (PRKN)
04121 Ubiquitin system [BR:
ecb04121
]
100057832 (PRKN)
03029 Mitochondrial biogenesis [BR:
ecb03029
]
100057832 (PRKN)
Enzymes [BR:
ecb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
100057832 (PRKN)
Membrane trafficking [BR:
ecb04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
100057832 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
100057832 (PRKN)
Xenophagy
Other xenophagy associated proteins
100057832 (PRKN)
Ubiquitin system [BR:
ecb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
100057832 (PRKN)
Mitochondrial biogenesis [BR:
ecb03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
100057832 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Crinkler
Motif
Other DBs
NCBI-GeneID:
100057832
NCBI-ProteinID:
XP_005608182
LinkDB
All DBs
Position
31:6434389..7640609
Genome browser
AA seq
466 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVDSNTSIFQLKEAVAKRQGVPADQLRVIFAGKDLRNDLTVQSCD
LDQQSIVHVVLRPQRKDQETNTPGGDKPQSAAMGGSEREPESLTRVDLSSSILPTHSVGL
AVILNSDCENDVPPPGRPAGRSTYNSFYVYCKGPCQRVQPGKLRVRCSTCQQATLTLAQG
PSCWEDVLIPNRMSGECQSPNCPGTRAEFFFKCGAHPTADKETSVALNLITTNSRDITCI
TCTDIRSPVLVFQCNYRHVMCLDCFHLYCVTRLNDRQFVHDPELGYSLPCVAGCPNSLIK
ELHHFRILGEEQYNRYQQYGAEECVLQMGGMLCPSPGCGAGLLPEPSRRKVTCEGGNSLG
CGFVFCRDCKEAYHEGECNALLEASGAVTQAYRVDERAAEQARWEEASKETIKKTTKPCP
RCHVPVEKNGGCMHMKCPQSQCQLEWCWNCGCEWNRACMGDHWFDV
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgtcaggttcaactccagccatggtttcccagtggaggtcgattctaac
accagcatcttccagctcaaggaggcggttgctaagcgacagggggttccagctgaccag
ttgcgtgtgattttcgcagggaaggatcttcggaatgacttgacagtgcagagctgtgac
ctggaccagcagagcatcgttcacgttgtgctgagaccccagagaaaagaccaagaaacg
aacacacctggaggggacaagccacaaagtgctgccatggggggctctgagagggaacct
gagagcttaacgcgtgtggacctcagcagctccatcctccccacccactcggtgggcctg
gctgttattctgaacagtgactgcgagaatgatgtcccgccacctggaaggccagcaggt
agatcaacctacaacagcttttatgtctattgcaaaggtccgtgtcagagagtccagcca
ggaaaactcagggtacggtgcagcacctgccaacaagccacgctcaccttggcccagggt
ccatcttgctgggaagatgtcttaatcccaaatcggatgagtggtgaatgccagtctcca
aactgccctgggacgagagctgaatttttctttaaatgtggagcacacccgaccgctgac
aaggaaacttcagtagctttgaacctgatcacgaccaatagtcgagacatcacctgcata
acatgtacagacatcaggagccctgtcctggttttccagtgcaactaccgccatgtgatg
tgcttagactgtttccacttatactgtgtgacgagacttaatgatcggcagtttgtccat
gaccctgagcttggctactctctgccttgtgtggctggctgccccaactccttgattaaa
gagctccatcacttcaggattcttggggaagagcagtacaaccggtaccagcaatatggc
gccgaagagtgtgtgctgcagatggggggcatgctgtgccccagccctggctgcggagca
ggcctgcttcctgagccaagcaggaggaaagtcacttgcgaagggggcaacagtctgggc
tgcgggtttgtcttctgccgggactgtaaggaagcgtaccatgaaggtgaatgcaacgcc
ctgcttgaagcctcgggagcagttactcaggcctacagagttgatgagagggcggcagag
caagcccggtgggaggaagcctccaaagaaacaatcaagaaaaccactaagccctgtcct
cgttgccacgtgccagttgaaaagaatggaggatgcatgcacatgaagtgcccgcagtcc
cagtgccagctcgagtggtgctggaactgtggctgcgagtggaaccgcgcctgcatgggg
gaccactggttcgacgtgtaa
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