Equus caballus (horse): 100058054
Help
Entry
100058054 CDS
T01058
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X5
KO
K12821
pre-mRNA-processing factor 40
Organism
ecb
Equus caballus (horse)
Pathway
ecb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100058054 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecb03041
]
100058054 (PRPF40A)
Spliceosome [BR:
ecb03041
]
Complex A
U1 snRNP components
U1 related factors
100058054 (PRPF40A)
Complex B
100058054 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100058054
NCBI-ProteinID:
XP_001916024
Ensembl:
ENSECAG00000009113
VGNC:
21887
LinkDB
All DBs
Position
18:complement(34655322..34710329)
Genome browser
AA seq
994 aa
AA seq
DB search
MQATPSEAEAGGESPQSCESAAPSDWTAGKPVSLLAPLVPPRSAGQPLTFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHG
MMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTASGAK
SMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQ
TKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTE
IPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASNTVGGTVPVVPEPEVTSIVA
TVVDNENTVTISTEEQAQLSSTPAVQDPSVEVSSNTGEETSKQETVADFTPKKEEEESQP
AKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNA
YKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERD
RLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHE
HGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDIL
KDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE
CQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESE
RSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKT
GKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagcgaggctgaggctggcggcgaatcgccgcagagctgcgagtcg
gcagcgccctctgattggacagcggggaagcctgtcagcttattggccccgttggtcccg
ccccgtagcgcagggcagcctttaacctttggccccagcgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatg
aggccggggacgggagccgagcgtggaggcctcatgatggggcaccctggcatgcattat
gccccaatgggaatgcaccctatgggtcagagagcaaatatgcctcctgtacctcatgga
atgatgccgcaaatgatgccccctatgggagggcctccaatgggacaaatgcctggaatg
atgtcttcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcct
gccttaccgccaggagtaaataatatggatgtggcagcaggtacagcatctggtgcaaag
tcaatgtggactgaacataaatcacctgatggaaggacttactactacaatactgaaaca
aaacagtctacttgggagaaaccagatgatcttaaaacacctgctgagcaacttttgtct
aaatgcccctggaaggagtacaaatctgactctggaaaaccttattattataattctcaa
acaaaagaatctcgctgggccaaacctaaagaacttgaggatcttgaaggataccagaat
accattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaa
gaaagcagtaagcaagaagagtgcaccacaacttcagcagccccagttcctacaacagaa
attccgaccacaatgagcaccatggctgctgcagaagcagcagctgctgttgttgcagca
gcagccgccgccgcagcagccgccgctgcagccaatgccagtgcttccacctctgcttct
aatactgttggtggaactgttccagttgttcctgagcctgaagttacttcaattgttgct
actgttgtagataatgaaaatacagtaacaatttcaactgaagaacaagcacaacttagt
agtacccctgctgttcaggatccaagtgttgaagtatccagcaatacgggagaagaaaca
tctaagcaggaaactgtagctgattttactcccaaaaaagaagaggaggaaagccaacca
gcaaagaaaacgtacacttggaatacaaaggaggaggcaaagcaagcatttaaagaatta
ttgaaagaaaagcgggtaccatccaacgcttcatgggagcaagctatgaaaatgatcatt
aatgatccacgatacagtgctttagcaaagttgagtgaaaaaaagcaggcctttaatgct
tataaagtccagacagagaaagaagaaaaagaagaagcaagatcaaaatacaaagaggct
aaggaatcctttcagcgttttcttgaaaaccatgagaaaatgacttccacaaccagatac
aaaaaagcagagcaaatgtttggagagatggaagtctggaatgcaatatcggaacgtgat
cgtcttgaaatctatgaagatgttttattctttctttcaaaaaaagaaaaggaacaagca
aagcagttgcgaaagagaaattgggaagccttaaaaaacatacttgacaacatggctaac
gtaacatactctactacttggtctgaagcccagcagtatctgatggataatccaactttt
gcagaagatgaggaactacagaacatggataaagaagatgcattaatttgctttgaagaa
cacattcgggctttagaaaaggaggaagaagaagaaaaacagaagagtttgctgagagaa
aggagacgacagcgtaaaaatagagaatcttttcagatatttttagatgaactgcatgaa
catggacaactgcattctatgtcgtcttggatggaattgtatccaacaattagttctgac
attagattcactaatatgcttggtcagccgggatcaactgcacttgaccttttcaagttt
tatgttgaggatcttaaagcacgttaccatgatgagaagaaaataataaaagacattcta
aaggataaaggatttgtagttgaagtaaataccacttttgaagattttgtggcaataatt
agttcaactaaaagatcaaccacattagatgctggaaatattaagttggctttcaatagt
ttactagaaaaggcagaagcccgtgaacgtgaaagagaaaaagaggaggctcggaagatg
aagcgaaaagaatctgcatttaagagtatgttgaaacaagctactcctccaatagaattg
gatgctgtgtgggaagatatccgggagagatttgtaaaagagccagcgtttgaggacata
actctggagtctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcacgaa
tgtcaacatcatcattcaaagaacaagaaacattctaaaaaatctaaaaaacatcacagg
aaacgttcccgctctcgatcggggtcagattcagatgatgacgacagccattcaaagaaa
aaaaggcagcgatcagagtcccgatctgcttcagaacattcttctagtgctgagtctgag
agaagctataagaagtcaaaaaaacataagaagaaaagcaagaagaggagacataaatct
gactctccggagtcagatgctgaacgggagaaggataaaaaagaaaaagaccgggaaagt
gaaaaagacagaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaagact
ggaaaggattctggtaattgggatacttctggcagtgaactgagtgaaggagaattggaa
aagcgcagaaggacccttttggagcaactggatgatgatcaataa
DBGET
integrated database retrieval system
