Equus caballus (horse): 100058134
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Entry
100058134 CDS
T01058
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ecb
Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100058134 (TNRC6C)
03036 Chromosome and associated proteins [BR:
ecb03036
]
100058134 (TNRC6C)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100058134 (TNRC6C)
Chromosome and associated proteins [BR:
ecb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100058134 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA
RRM_1
RRM_occluded
THOC7
Motif
Other DBs
NCBI-GeneID:
100058134
NCBI-ProteinID:
XP_023507702
Ensembl:
ENSECAG00000012486
VGNC:
24400
LinkDB
All DBs
Position
11:complement(4403519..4503393)
Genome browser
AA seq
1691 aa
AA seq
DB search
MATGSAQGNFTGHTKKTNGNNGTNGALVQSPSNQSALGAGGANGNGSAARVWGVAAGSSS
GLPHCSLSGGDGKMDNMIGDGRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGAVAT
GNSSSICSPVSAVGQNMGNHNGNPAGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLN
TDGPNNTKPMNPPPNPSNAMQANGLPNWGMAVGMGAIIPPHLQGLPGANGSSASQVSGGG
GEGIGSSVWGLSPANPATGNSNSGFNQGNGDTVNSALSAKQNGSSSAVQKEGNGGNAWDS
GPPAGPGILAWGRGSGNNAVGNIHSGAWGHPSRSTSTSVNGEWGKPPNQHSNSDINGKGS
TGWDSPSVSSQNPAMQPGSEHMNSWAKAASSGTTASEGSSDGSGSHNEGSTGREGAEGRR
RDKGIVDQGHIQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGC
AATQPSNSGGKNDGSIMNSTNTSSVSGWVSSPPAAVPANTGWGDSSNKAPNGPGVWGDSI
SSTAVNNAAAAKSGHAWSGTINQEDKSPTWGEPQKSKSQNWGDGQKANPAWSAGAGDWAD
SSSVLGHLGDGKKAGSAWDADSNRSGSGWNDATRSGTSGWGNGTNAKVNPGTNWGESLKP
GPQQNWASKPQDNNMGNWGGAASVKQTGAGWIGGPVPVKQKDNGEATGWEEPSPPSIRRK
MEIDDGTSAWGDPSSYTNKTVNMWDRNNPGLQNSTTANSTTTTTTTSNSTNVGETPPSHQ
ASAPLNRSPLLGPVSSGWGEMPNVHSKPESSWGEPSSPSTLVDNGTAAWGKPPSSGSGWG
DQPAEPAVTFGRAGAPAAAPALCKPASKSMQEGWGSGGDDMNLGTGQWEEEEGSMWNNAA
SQESTSSCSSWGNASKKGLQKGVKTSGKQDEAWIMNRLIRQLTDMGFPREPAEEALKSNN
MNLDQAMSALLEKKVDMDKRGLGVPDYNGMVTKPLGCRPPISKESSVDRPTFLDKLTLSF
SNQDGGLVEEPTTSPFLPSPSLKLPLSNSALPNQALGGIASGLGMQNLNSSRQIPSGNLG
VFGSSGAAQARTMQQPPQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPA
LLTSPINPQHMTLLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTITNLQQ
QIQQHQRQLAQALLVKPPPPPPHLSLHPSAGKSAVDSFPPHPQAPGLPDLQTKEQQPSPS
TFAPHPLAGLNPNMNVNSMDMTGGLSVKDPSQSQSRLPQWTHPSPMDSVPGAASPLLDQN
PSKHGAIPGGLGIGPPAKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISN
GSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGKLS
DIKSTWSSGPASHTQASLSHELWKVPRNTAAPTRPPPGLTTPKPSSTWGASPLGWTSSYS
SGSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSK
EEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSSTGTSQTRLGAS
GSSHGLVRSDAGHWNAPCLAGKGSSDLLWGGVPQYSSSLWGPPSSDDGRVIGSPTPLNTL
LPGDLLSGESI
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atggctacagggagtgcccagggcaacttcactggacatactaagaagaccaatggcaat
aatggcaccaatggcgcactcgtccaaagcccttcgaatcagagtgcccttggagcaggg
ggagcaaacggtaatggaagtgcagccagggtgtggggcgtagctgcaggctccagctcc
ggcctgcctcactgctctctcagtggtggggatgggaaaatggacaacatgatcggagat
gggagaagtcagaattgctggggtgcttccaactccaatgctggcattaatcttaacctt
aatcctaatgccaacccagctgcctggcctgtgcttggacatgaaggagctgtggcgaca
ggcaactcttccagtatttgcagtccagtcagtgccgtaggccaaaatatgggcaaccac
aatgggaacccagcaggcactttgggtgcttggggaaacttgctgccacaagagagcaca
gagccacaaacgtccacttctcagaatgtgtctttcagcgtacaacctcagaaccttaac
actgatggaccaaataacactaagcccatgaaccctccaccaaaccctagcaatgcaatg
caggcaaatggactgccaaactggggcatggctgttggtatgggcgccatcatcccaccc
cacctgcaaggccttcctggtgctaacggatcatcagcttctcaagtcagtgggggcggt
ggtgaaggaatcggcagttctgtgtggggactatccccagctaaccctgccacaggaaat
agcaattctgggttcaatcaggggaatggagacactgtgaactcagcattaagtgctaaa
caaaatggatccagcagtgctgtgcaaaaggaagggaatggaggaaacgcttgggattcg
ggacctcctgctggtcctggaatcctcgcttggggaaggggcagtggcaacaatgccgta
ggtaatatccattcgggagcttggggccaccccagccgaagcacctctaccagtgtgaat
ggagagtggggaaagcccccaaaccagcattccaatagtgacatcaatgggaaaggatca
acagggtgggatagtcctagtgttagcagccagaatcctgccatgcagcccggcagtgaa
cacatgaactcttgggccaaagctgcatcttctggaactacagcaagtgaaggaagtagt
gatggttctggcagtcacaatgaaggaagcactgggagggaaggagcagaaggccgaagg
cgagataaagggattgtagaccaagggcacatccaattgccaaggaacgatcttgaccca
agagttctgtctaatactggttggggacagactccagtaaagcaaaacactgcctgggaa
tttgaagaatcccctaggtctgagagaaaaaatgacaatgggacagaggcctggggttgt
gcagctactcagccttcaaactcaggggggaagaacgatgggtccatcatgaacagtaca
aatacctcttcagtatctgggtgggtcagctcaccacctgctgctgtgccagcaaacaca
ggttggggagacagcagcaacaaagcgccaaatggcccaggggtttggggggactcgata
agctctactgctgttaataatgctgctgctgccaagagtggccacgcttggagtgggacc
ataaatcaggaggacaagtcacccacctggggtgagcctcaaaaatccaaatctcagaac
tggggagatggacagaaagctaatccagcctggagtgcaggagcgggagactgggcagat
tcatcttctgtccttggacacttgggggatgggaaaaaagctggctctgcatgggatgcc
gacagtaatcggtcagggtctggttggaatgatgctacaaggtctgggaccagtggctgg
ggcaatggcacaaacgcaaaggtaaatccaggtacaaactggggagagtctttaaaacct
ggcccccaacagaactgggccagcaagccccaagacaacaacatgggtaactggggcgga
gccgcttccgttaaacagacaggagcagggtggatcggggggccggtccctgtcaaacag
aaggacaatggtgaggccacgggctgggaagaaccttctcctccatccattcgacgcaaa
atggaaattgatgatggtacctcagcttggggcgacccgagcagttacaccaacaaaact
gtaaacatgtgggatagaaacaacccaggcctccagaacagtaccacagccaacagcacc
accaccaccaccaccacgagtaacagcacgaacgtgggcgagacaccgccctcacaccag
gccagcgccccgctgaatcgatcgccactgcttggcccagtgtcctcaggctggggagaa
atgcctaatgttcactccaagcctgagagctcttggggagagccctcctccccttccacc
ctggttgacaacggcacggcagcgtggggcaagccgcccagcagtggcagcggttggggg
gatcagcctgctgagccagcggtgacattcggaagagccggggctcccgctgccgcccca
gccctgtgcaaaccagcttcaaaatctatgcaagaaggctggggcagtggtggggatgac
atgaacctcggtactggtcagtgggaagaggaagaagggagcatgtggaacaatgctgct
tcccaagaaagcacctcctcctgcagttcctgggggaacgcctccaaaaaaggactccaa
aagggcgtgaaaacgtctggcaagcaggacgaggcctggatcatgaaccggctcatcaga
caactcacagacatgggcttcccgagagagccagctgaagaggccttgaagagtaataat
atgaaccttgaccaggccatgagcgctctgctggaaaagaaggtggacatggacaagcgt
ggactgggagtgcctgactacaatggaatggtcaccaaaccccttggctgccgcccacca
atctccaaagagtcttccgtggaccgccccacctttcttgacaagctcaccctttctttc
tccaatcaggatggcggcctagtggaagagcccacgacttcaccatttttgccttcacca
agcctgaagctccccctttcaaacagtgcactccctaatcaggccctgggtgggattgcc
tcagggctgggcatgcaaaacttgaattcctctagacagataccgagtggcaatctgggt
gtatttggcagcagcggagcagcacaagccaggaccatgcaacagccgccgcagccgccc
gtgcagcctctgaactcctcccagcccagtctccgtgctcaagtgcctcagtttctatcc
cctcaggttcaagcacagcttttgcagtttgcagcaaaaaacattggtctcaaccctgca
ctattaacctcgccaattaatcctcagcatatgacgctgttgaaccagctctatcagctg
cagctggcataccaacgtttacaaatccagcagcagatgttacaggcccagcgtaatgtt
tccggacccatgagacaacaggagcagcaagtcgcgcgcacaatcactaacctgcagcag
cagatccagcagcaccagcgccagctggcccaggccctgctcgtgaagccgccgccgccc
ccgccacacctgtctctgcacccttctgcaggcaaatcggccgtggacagcttccccccc
cacccccaggcccctggcctgcctgacctgcagaccaaagagcagcagccttcgcccagc
acctttgctccgcaccctctcgctggactgaacccaaacatgaatgtcaacagcatggac
atgactggtggtttgtcagtgaaggacccgtcccagtcccagtcgcgcctccctcagtgg
acacaccccagcccgatggacagcgtacccggtgctgcttctcctctcctggatcagaac
cccagcaagcatggtgctatccctggaggtctaggcattgggcctccagctaagtcctcc
attgacgactcctatgggcggtacgatttaatccagaacagtgagtcaccagccagtcct
cctgtagctgttccccatagctggtcgcgtgccaaatctgacagtgataaaatctcaaat
ggctccagcatcaactggcccccagaattccaccctggagttccgtggaaaggacttcag
aatatagatcctgagaatgaccctgacgtcactcctggaagtgtccccaccgggcctacc
atcaatactaccatacaggatgtcaaccgctacctcctcaagagtggaggtaaactttcg
gacattaaatcaacgtggtcctctggccccgcctcccacacgcaagcctctctgtctcat
gaactgtggaaggtgcccagaaacactgctgcacccacaaggccacctccagggttaacc
acccccaagccttcctccacctggggagccagtccccttggctggaccagctcttactcc
tcgggttctgcttggagcactgacacctcaggaagaacaagcagctggctcgttctccgc
aacctcacgccccagatcgatggttcgacgctgcggacgctgtgtttgcagcacggccct
ctcatcacgttccacctgaacctgactcaaggcaacgctgtggtccggtacagctccaag
gaggaagccgccaaggcccagaagtccctgcacatgtgtgttctgggaaacactaccatc
ttggccgagttcgctggcgaagaagaagtgaatcgtttcttagcccaaggccaagcgctg
ccgcccacctccagctggcagtccagcactggcaccagccagacacggctgggcgcctcg
ggcagctcccatggcctggtgcggagcgacgctggccactggaacgccccgtgcctggca
ggcaaagggagcagtgacctgctgtggggtggggttccacagtactcaagcagcctgtgg
ggcccacccagcagcgacgacggcagggtgataggaagccccaccccgctgaacactctg
cttcccggcgaccttctcagtggcgagtccatctag
DBGET
integrated database retrieval system
