Equus caballus (horse): 100058786
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Entry
100058786 CDS
T01058
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ecb
Equus caballus (horse)
Pathway
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100058786 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100058786 (PNLDC1)
Enzymes [BR:
ecb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100058786 (PNLDC1)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100058786 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100058786
NCBI-ProteinID:
XP_023488712
Ensembl:
ENSECAG00000012898
VGNC:
21622
LinkDB
All DBs
Position
31:complement(8507574..8526890)
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AA seq
531 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWSVHSSPDKDQIKVVIDEVTRWLDLAAEGDW
MTLPGIAGFQAFEVQLVLRQALPDIWTVLRDQGVVVKKVSKQHRWYLENTSGDRESCWKE
KILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEQFKLNVHNLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPSKNSGPVIIHASKCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLWRVHGASSIPELSFPLYLDVLAPYVNQVNLIRAGVPKIN
FSGPDYPSIRPPILILRVRRWPGLSEQQVYREFQNLCKFDVRRLTRSQFLLLTNKFKDAR
TILREYRGHPTLQVSLYRHWRHSPSVNCVLQVCGVVTTWALLAFLLGRPGP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagagcctgcccctgctgcaggagcttgtcctg
ggcgcggacttcgtgggtctggacatagagttcaccggccttcgttccaacctgtctcga
ccccagcagatcagtctttttgacttgccatccgagtggtatctaaagacgcgccagagc
gttcagcagttcaccatctgccagatcggattgtctgtgttctccagtattgaaggagag
tcaaacaagtatgtagcccattcatgtaacttctttctcttccctacaacatttgggatt
ttggattcggaattctctttccaggcttccagtgttcagtttttgaatcagtacggcttc
gactacaacaagtttctcaaaaacggaatcccgtatatgaatgaagaacaggagaagaaa
attaaacacaacatcctcactgggaactggagcgttcacagttctccggataaagaccaa
atcaaggtggtgattgatgaggtgacgcggtggctggacctggcagccgaaggtgactgg
atgactctccctggtattgctggcttccaggcctttgaggtccagctggtgctgaggcag
gccctccccgacatctggacggtgctcagagaccaaggggtggtagtgaagaaagtgagt
aaacagcatcgctggtaccttgagaacacgtctggggatcgagagagctgttggaaggag
aagattcttctctctgccaggggtttctctgtgtttttccagatgctggtgaaagcccag
aagcccttagtgggacataatatgatgatggatctgctgcatctgcatgagaagttcttc
agacccctcccagaaagctacgagcagtttaagctgaacgtccacaacctgtttcctgtt
ctcattgataccaagaacgtgacgaaggatatctggaaggaactgaatttcccaagggtt
tcaaatctctccgaagtgtatgaagtcctcaacagtgacttgaatcccagcaagaattct
gggcctgtgattattcatgcaagcaagtgtgaaaaatacgttgagaccaagtacccccac
gaagcagcatacgacgccttcctctgcggctcagttctcttgaaagtggcacacttgctc
ctgtggagggtgcatggtgccagttccatcccggagctctccttccctctgtacctcgat
gtgctggccccttatgtgaaccaggtgaatcttatccgagctggcgtccctaagattaat
ttttctggtcccgattacccgagtatccgccctcccatcctcatcctccgtgtcaggagg
tggcctgggctcagcgagcagcaagtctaccgggagtttcagaatctctgcaaattcgac
gtccggcggctcacgcggagccagttcctgctgctgaccaacaagtttaaggacgctcgc
accatcttgagggagtaccggggccaccctaccctgcaggtctccctctaccggcactgg
agacactccccgagcgtcaactgcgtgttacaagtctgtggcgtggtcaccacctgggcc
cttctcgcgttcctcctcgggaggcctggcccctga
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