Equus caballus (horse): 100058878
Help
Entry
100058878 CDS
T01058
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X4
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ecb
Equus caballus (horse)
Pathway
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100058878 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100058878 (PATL1)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100058878 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
100058878 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100058878
NCBI-ProteinID:
XP_001498440
Ensembl:
ENSECAG00000011411
VGNC:
21174
LinkDB
All DBs
Position
12:complement(23123124..23151010)
Genome browser
AA seq
772 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PAAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMTAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPAVSVLEYALPQRTPQAPEDDRDLSERALPRRSTSP
VIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAAMNPK
LLQGRVGQMLPPAPGFRAFFSAPPPATPPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLH
PQHRRLLHQRQQQNRNQHRNLNGAGDRGSHRSSHHDHLRKDPYANLMLQREKDWVSKIQM
MQLQSTDPYLDDFYYQNYFEKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHTYKPVQF
EGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVED
YERRYLLSLEEERPALMEERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVA
RILPFLSTEQAADILMTTARSLPFLIKKDAQDEVLPCLLSPFSLLVYHLPSVTVTSLLQQ
LMNLPQSAAAPAPSNPHLTAVLQNKFGLSLLLVVLSRGEDLQSSDPAAESTQNNQWTEVM
FTATQELLRIPQAALAKPLSIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctggatgaagatgaagatgcatttcag
ggcctgggagaggaagatgaagagattgatcaatttaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgaactggaagagaagctc
ccagcggccgttaatgaacaaacaggcaatggagaaagggatgagatggacttgttgggt
gaccatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaactagaa
gatccagctatcatgacggctgtgcagaccaggccagttttgcaaccccaaccaggaagt
ctcaattccagcatctgggatggatctgaagttctgaggcgaatccgaggaccgctgctt
gctcaggaaatgcctgcagtgtctgtattagaatatgccttgcctcagaggaccccacag
gcccctgaagacgatcgggacctttctgagcgtgcattaccacggcggtcaacgtcacct
gtcattgggagtcctcctgttagagctgtccccataggcaccccacccaagcagatggct
gtacccagcttcaaccagcagattctgtgcccgaaacctgtccatgttcggcccccaatg
ccaccgcgttatcctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcttccctactgggtcaccctttccctcctagtgttcctcctgttctcagcccc
ctccagagagcacagcttcttggaggagcacagctgcagcctggacggatgtctcccagc
cagtttgcacgggtccctggatttgttggcagtccacttgctgctgccatgaatcccaag
ttgctgcaagggcgagttgggcagatgcttccccccgcaccaggcttccgtgccttcttt
agtgctccaccccccgctaccccacctcctccacagcagcacccccctggcccaggacct
cacctgcaaaacctaagatctcaggccccaatgtttagaccagacacaactcaccttcat
ccacagcaccgtcgactcttgcatcagagacaacagcagaacagaaatcagcatcggaac
ctcaatggtgcgggagatagaggaagtcaccggagcagtcatcacgatcatctccggaag
gatccatatgccaatctcatgttgcagcgagaaaaggattgggtctctaaaatccagatg
atgcagctgcaaagcactgatccctacctggatgatttttattaccagaattactttgaa
aaactggagaaactgtcagctgctgaagaagtgcaaggtgatggccctaaaaaggagcgc
accaagctcattacccctcaggtggccaaactggagcacacctataagccagtgcagttt
gagggctctttgggaaagctgactgtctccagtgtgaataatccccgaaaaatgattgat
gctgttgtgacatctcggagtgaagatgatgagacaaaggaaaaacaggttcgggacaag
agacgaaaaacccttgtcataattgagaaaacctatagtttactcctggatgtggaggat
tatgaaaggcggtatctcctaagtctagaagaagagcgaccagccctgatggaagaaaga
aaacacaaaatttgcagcatgtatgacaacttaagggggaaattgcccggtcaagagagg
ccaagtgatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcc
cgcattcttcctttcctctccacagagcaagcagctgacattctcatgacaacagctagg
agcctccctttcctcatcaagaaggatgcacaagatgaggtgctgccatgcttactgagt
cccttctctctcctcgtctatcatcttccatcagtgactgtcaccagccttctgcaacag
ctgatgaacctacctcagagcgcagctgcaccagcaccctctaatccccacctcactgct
gtgctccagaacaagtttggcctgtcactgctcctcgtcgtgctgagccgtggggaagac
ctacagagttcagaccctgctgcagaatcaacgcaaaacaaccagtggacggaggtgatg
ttcacagcaacccaagaacttctgcgcatcccccaggcagccctggccaagccactctct
atacccacaaacctagtatccctcttttctcgctatgttgaccgacagaaactgaacttg
ctggagacaaaactgcagctagttcaggggatacgataa
DBGET
integrated database retrieval system
