Equus caballus (horse): 100059688
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Entry
100059688 CDS
T01058
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
ecb
Equus caballus (horse)
Pathway
ecb03015
mRNA surveillance pathway
ecb03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100059688 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100059688 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100059688 (CPSF6)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
100059688 (CPSF6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
100059688
NCBI-ProteinID:
XP_023499749
Ensembl:
ENSECAG00000015988
VGNC:
16837
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Position
6:85339536..85370904
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AA seq
589 aa
AA seq
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MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVK
GTRPLFLETRIPWHMGHSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPL
AGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF
PPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDP
YGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGS
AIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRS
REKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatcgacatctacgcggacgtgggcgaggagttcaaccag
gaagctgaatatggtgggcatgatcagatagatttatatgatgatgtcatctctccatct
gcaaataatggagatgccccggaagacagggattacatggatactctcccaccaaccgtt
ggtgacgacgtgggtaaaggagcagcaccgaacgttgtgtatacgtacaccgggaagaga
attgctttgtacattgggaacctaacgtggtggacaacagatgaagatttaactgaagca
gttcattctctgggagtaaatgatattttggagataaaattttttgaaaatcgggcaaat
ggccagtcaaaggggtttgcccttgttggtgttggatctgaagcatcctcaaaaaagtta
atggatctgttgcctaaaagagaacttcatggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcagtccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccaggaggcagttcacgcgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcccggtggggacagatttcctgggcca
gcaggaccaggagggccacccccaccttttccaggaaatttgatcaagcatcttgttaaa
ggaactcggcctttgttcctggaaactaggattccatggcatatggggcacagcatagag
gaaatacccatttttggcctaaaagctggacagactccaccgcgtccacccttaggtcct
ccaggcccacctggtccaccaggtcctccacctcctggtcaggttctgccgcctccttta
gctgggcctcctaatcgaggagatcgccctccaccaccagttctttttcctggacaacct
tttgggcagcctccattgggtccgcttcctcctggtcctccacctccagttccaggctac
ggcccccctcctggtccaccacctccacaacagggaccacctccacctccaggccccttt
ccacctcgcccacctggccctcttgggccaccccttacacttgctcctcctccgcatctt
cctggaccacctccaggtgctccaccgccagctccacatgtgaacccggctttctttcct
ccaccaaccaacagcggcatgcctacatcagatagccggggtccaccaccgacagatccc
tatggccggcctccgccatatgataggggtgactatggacctcctggaagggaaatggat
actgcaagaacaccattgagtgaagctgagtttgaagaaatcatgaatagaaatagagca
atctcaagcagtgctatttcaagagctgtgtctgatgccagtgctggtgattatgggagt
gctattgagacactggtaactgcgatttctttaattaaacagtctaaagtatctgccgat
gatcgttgcaaagtccttattagctctttgcaagattgccttcatggaattgaatccaag
tcttacggttctggatcaagaagacgtgaacgatcaagagagagggaccatagtagatca
cgagaaaagagtcgacgtcataagtcccgtagtagagatcgtcatgatgattattataga
gagagaagcagagaacgagagagacaccgggaccgtgatcgtgaccgagaccgagagcgt
gaccgcgagcgcgagtatcgtcatcgctag
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