Equus caballus (horse): 100060112
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Entry
100060112 CDS
T01058
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04151
PI3K-Akt signaling pathway
ecb04510
Focal adhesion
ecb04512
ECM-receptor interaction
ecb04820
Cytoskeleton in muscle cells
ecb04926
Relaxin signaling pathway
ecb04933
AGE-RAGE signaling pathway in diabetic complications
ecb04974
Protein digestion and absorption
ecb05146
Amoebiasis
ecb05165
Human papillomavirus infection
ecb05200
Pathways in cancer
ecb05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100060112 (COL4A6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100060112 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100060112 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100060112 (COL4A6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100060112 (COL4A6)
09154 Digestive system
04974 Protein digestion and absorption
100060112 (COL4A6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100060112 (COL4A6)
09162 Cancer: specific types
05222 Small cell lung cancer
100060112 (COL4A6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100060112 (COL4A6)
09174 Infectious disease: parasitic
05146 Amoebiasis
100060112 (COL4A6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100060112 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecb04147
]
100060112 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
ecb00536
]
100060112 (COL4A6)
Exosome [BR:
ecb04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100060112 (COL4A6)
Glycosaminoglycan binding proteins [BR:
ecb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100060112 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100060112
NCBI-ProteinID:
XP_014584568
Ensembl:
ENSECAG00000021274
VGNC:
16743
LinkDB
All DBs
Position
X:complement(89556052..89812563)
Genome browser
AA seq
1708 aa
AA seq
DB search
MHPGLWLLLVTLCLTEELAGAGEKKSYGKLCGGQDCSGGCKCFPEKGARGRPGPIGIQGP
TGPQGFAGPSGLSGLKGERGSPGPLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGP
PGLDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGEPVFAQGSFKGMKGDPGLPGLD
GVTGPQGAPGSPGAVGPIGPPGAQGPPGPPGFPGPDGNMGLGFQGEKGAKGDVGLPGPAG
PPPSTGELEFMGFPKGKKGSKGEPGLQGFPGKAGLPGLPGFGITGEKGEKGIPGLPGPRG
PMGLEGVPGPPGSQGKKGASGFPGLNGFPGIKGEKGGIGLPGPDVFIDRDGAVISVPGYP
GDPGMPGLPGLKGDEGIQGPPGPSGIPGLPALPGVPGALGPQGVPGMKGDQGNPGRTTIG
AVGLPGRDGLPGLPGLPGPPGPAFETGTLQNTEPGFPGLRGERGPKGNPGLKGVKGDSGF
CACDGGVPNTGPPGEPGLPGPPGLMGLPGLKGIRGDPGSGGARGLSGARGLFGTQGPAGP
KGEKGEPTVSTGLGMPGDQGDPGPQGLPGETGAPGKDGIPGLPGLPGLLGDDGQGFPGEK
GLPGLPGDKGHSGPTGPPGIGLPGSPGPRGLPGDQGLDGLPGQQGLPGLPGDCCCKEKVG
KGDLDTKGGITLPCIIPGPYGPSGFPGTPGFPGPKGARGLPGTPGQPGLHGNKGEPGSPG
LVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKVGSPGLPGSKGAPGDIFGAEDGAPGE
QGLQGLPGDRGFPGDSGFPGPKGLLGKSGLLGPKGERGRPGIPGLMGQPGLPGAGGLFGI
KGKPGLPGAPGFPGTSGHPGKKGPRGETGPPASAGKRGLPGLKGFPGAPGLIGFLGNSGL
PGVTGLPGLPGLKGGKGSVGLIGFPGMPGLPGIPGASGLKGVPGSPGRVGPSGRTGSPGE
KGDRGDPGPVGLPSPRLPMLNLQFKGDRGSRGSAGSNGFPGPRGDKGVAGRPGPPGLPGP
PGFPSTIKGLIGRPGLPGPTGLRGLPGLKGSPGITGFPGIPGESGSQGLNGAPGLPGASG
LPGSKGDHGQTLGISGTPGPKGQPGETGFEGVKGKAGLVGDVGFPGNKGEDGKVGLSGDV
GLPGSPGLPGIAGMRGNPGLPGTPGHPGATGPLGPPGLVGIKGFPGLPGLHGLNGLPGTK
GTHGTPGPSITGVPGPAGLPGPKGEKGPPGISMGAPGKPGMKGQKGDRGFPGLQGSAGLP
GAPGLSLPSVIAGQPGDPGRPGLDGERGRPGPQGPRGPPGPSSDQGDPGDPGFPGIPGPQ
GPKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGFPGMKGKTGPRGFSGPR
GAPGQTPIAEAIQVPPGPMGLPGIDGIPGLTGDPGLQGPVGLQGSKGLPGIPGKDGPSGL
PGPPGALGDPGLPGLQGPPGFEGAPGKQGPFGRAGMPGQSVRVGYTLVKHSQSEQVPLCP
IGMSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYAGRNDKSY
WLSTTAPIPMMPVGQTQIPQYISRCSVCEAPSQAIAVHSQDITIPRCPLGWRSLWIGYSF
LMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQF
REEPVSETLKAGQLHTRVSRCQVCMKSL
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctgggttgtggctgctgcttgttacgttgtgcctgacagaggaactggcagga
gcgggagagaagaaatcctatggaaagctatgcgggggccaagactgcagtggaggctgt
aaatgctttcctgagaaaggagcaagagggcgaccaggaccaattggaattcaaggccca
acaggtcctcaaggatttgctggcccgagtggtttatcagggttgaaaggagaaaggggc
tccccaggccctctgggaccatacggaccaaaaggagataagggtcccatgggagttcct
ggctttcttgggatcaatgggattccgggccaccccggacagccagggcccagaggccca
cctggcctggatggctgtaatggaactcaaggagctgttggatttccaggccctgatggc
taccctgggcttctcggaccaccgggccttcctggtcagaagggctctaaaggtgaacct
gtctttgcccaaggtagtttcaaaggaatgaagggggatcctggactgcccggactggat
ggagtcactgggccacaaggagcacccggatctccaggagctgtaggacccataggacca
ccaggagcacaaggtcctccaggcccccccggtttccctggtcctgatgggaatatgggg
ttaggtttccaaggagagaaaggagccaagggggatgttggcctccctggccctgcagga
cccccaccatctactggagaactggaatttatggggtttcccaaagggaagaaaggatcc
aagggtgaaccagggcttcaaggtttcccaggaaaagccggccttccaggtctcccggga
tttggaattactggagagaaaggagaaaagggaatccctggtttgccaggacctaggggt
cccatgggtttagaaggagtcccaggtcctccagggagtcagggcaagaagggggcctca
ggtttcccagggcttaatggattcccaggaattaagggtgaaaagggtggcattggtctg
ccaggccccgatgttttcattgatagagatggtgctgtgatctcagtgccaggttatcct
ggagaccccggcatgccaggcctcccaggccttaaaggggatgaaggcatccagggcccg
cctggcccttctggcatccctggcttaccagctttaccaggtgtcccaggtgccctaggg
ccccagggagttccaggcatgaagggggatcaaggaaacccaggccgcaccacaattggg
gcagttggcctccctggcagagatggtttgccaggcctaccaggcctaccaggcccaccc
ggtccagcatttgagactggaaccctacagaacacagagccagggttccctggtctccga
ggagaacgaggtccaaaaggaaacccaggcctcaaaggagtaaaaggagactcaggtttt
tgtgcttgtgatggtggtgttcccaacactggaccacctggggagccaggcctgcctggg
ccaccaggtctcatgggcctcccaggccttaaaggaatcagaggagatccaggctctggg
ggagcacggggcctatcaggggctcgaggtttatttgggactcaaggtcctgcaggcccc
aaaggagagaagggagaaccaacggtcagtacaggattggggatgccaggagaccagggt
gatcctgggccccaggggctccctggtgagacaggagccccaggcaaggacggaatacca
ggtttaccaggtctgccaggccttctgggtgatgatggacagggcttcccaggtgaaaag
gggttaccaggacttcctggtgacaaaggccatagtggtccaaccggacccccaggaatt
gggctaccaggatcccctggacctcgcgggcttcctggagatcaaggactagatggattg
ccaggacaacaaggcctccccgggcttccaggtgactgctgctgcaaggagaaggttggt
aaaggagacttagacacaaagggaggtattaccttgccttgtattattcctgggccatat
ggtccatcaggattcccaggaactcccggattcccaggccctaaaggggcccgtggcctc
cctgggactccaggccagcctggattacatggaaataaaggagagcccggaagtccagga
ttggttcacctccctgaattgccaggatttcctggacctcgtggggagaagggcttgcct
gggtttcctgggctccctggaaaagatggcttgcctgggaaagttggcagtccaggttta
ccaggttccaagggagcccctggtgacatctttggtgctgaggatggtgctccgggggag
caaggcctacagggattaccaggggacagaggatttcctggagactctggctttccagga
cccaagggtttgcttgggaagtcaggcttgctaggccccaaaggtgaacggggcaggcct
ggaataccaggcctcatgggacaaccaggccttcccggggctggtggtctatttggcatc
aagggcaaacccggactcccaggagcaccaggctttccaggcacttcgggacatcctgga
aagaaaggtccaaggggcgagacaggtccccctgcatcagctggaaagagaggtctccct
gggctgaaaggctttcctggagctccagggctaattggcttcctggggaactcaggcttg
ccaggggtcactgggttgccaggcctgccaggtctgaagggtgggaaagggtctgttgga
ctgataggttttccagggatgccaggtctccctggtattcctggtgcaagtggattaaag
ggagttcctgggtcaccaggaagagtgggaccatctggacggactggtagccctggtgag
aaaggagacagaggcgacccagggcccgttggactacccagtccaagacttccaatgctg
aacctccaattcaaaggagacagaggctctcggggctcagctggatccaacggatttcct
gggcccagaggtgacaaaggagtagctggccgtcctgggccaccaggcttacctggacct
cctggcttccccagcaccatcaagggacttattgggagaccaggcctccctggtcccaca
ggactacggggcttacctggcctgaaggggtcccctggaatcacaggtttcccaggcata
cccggagaaagtggttcacagggtctcaatggagcgcccgggctcccaggagcatctggt
ctaccaggttcaaaaggagatcacggccagacactcggaatttccggtaccccaggaccc
aagggacaacctggggagactggttttgaaggtgtgaaaggaaaagctggactagtgggt
gatgtgggcttcccaggaaacaaaggtgaagatgggaaagttggtctttctggagatgtt
ggccttcctggctccccaggactccccgggattgcaggcatgagaggaaatccagggctt
ccgggtactccaggccatccaggggcaactgggcccctgggacctcctggcctagtagga
atcaaaggtttccctggacttcctggtttacatggactgaatgggcttccaggaacaaag
gggacccatggaactccaggacctagtataactggtgtgcctgggccagctggcctgcct
ggtcccaaaggggaaaaaggtcctccaggaatcagcatgggagccccagggaagccaggc
atgaaaggacaaaaaggtgaccgaggtttcccaggtctccagggctctgctggtctccct
ggggccccaggcctctccttgccctcagtcatagcaggacagcctggcgaccctgggcga
ccaggcctagatggagaacgaggccgaccaggcccccaggggccccgagggccccctggg
ccatcctctgatcaaggcgacccgggagaccctggcttccctggaattccgggccctcaa
gggcccaagggagaccaaggaattccaggtttctctggcctccctggagagctaggactg
aaaggcatgagaggtgagcctggcttcatggggactccaggcaaggttgggccacctgga
gacccaggatttcccgggatgaaggggaagacagggccaagaggcttttccggcccccga
ggtgctcctggacaaacaccaattgcagaagccatccaggttcctcccgggcccatgggt
ctaccgggcattgatggcatccctggcctcacaggggaccctgggcttcaaggccctgta
ggtctacaaggctctaaaggtttacctggaatccctggcaaagatggccccagcggactc
cccggccctcctggggctcttggtgaccctggtctccctggactgcaaggccctccagga
tttgaaggagctccagggaagcagggccccttcgggagggctggaatgcctgggcagagc
gtgagagtgggctacaccttggtgaagcacagccagtcggaacaggtgcccctgtgcccc
atcgggatgagccagctgtgggtgggttacagcttgctgttcgtggaggggcaggagaaa
gcccacaaccaggacctggggtttgctggctcctgtcttccccgctttagcaccatgccc
ttcatctactgcaacatcaatgaagtgtgccactatgccggacgcaacgataaatcctac
tggctctccaccaccgcccccatccccatgatgcctgtcggccagacccagattccccag
tacatcagccgctgctctgtgtgtgaggctccctcacaagccattgctgtgcacagtcag
gacatcaccatcccacggtgccccctgggttggcgcagcctctggatcgggtactccttc
ctcatgcacactgccgctggcgccgagggcggaggccagtccctggtctcacctggctcc
tgcctagaggattttcgggccactcctttcatcgagtgcagtggtgcccgaggcacctgc
cactactttgctaacaagtacagtttctggctgacaacagtggaggagaggcagcagttt
agggaggagcctgtatccgaaacgctaaaagccgggcagctccacacccgggtcagccgc
tgccaggtgtgtatgaaaagcctgtag
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