Equus caballus (horse): 100061226
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Entry
100061226 CDS
T01058
Symbol
COL11A2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X9
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04820
Cytoskeleton in muscle cells
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100061226 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100061226 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecb00536
]
100061226 (COL11A2)
Glycosaminoglycan binding proteins [BR:
ecb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100061226 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100061226
NCBI-ProteinID:
XP_001918016
Ensembl:
ENSECAG00000017342
VGNC:
16722
LinkDB
All DBs
Position
20:complement(34514630..34543863)
Genome browser
AA seq
1629 aa
AA seq
DB search
MERCSRCHRLLLLVPLVLGLSAAPAWAGTPPVDVLRALRFPSLPDGVRRARGICPADVAY
RVSRPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVQQLGLELGRPV
RFLYEDQTGRPQPPAQPVFRGVSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSAH
PVLDTHGVIIFGARILDEEVFEGDVQELVIVPGVQAAYESCEQKELECEGGWKERPQKQQ
SHRTQRSPKQQPPRLHRPQNQEPQQQTARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPA
GLTGPRGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVV
AAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGL
TGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGE
DGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGP
PGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGP
SGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGE
DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA
RGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGF
PGPKGPPGPSGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP
PGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGP
AGPPGPAGSPGERGAAGFGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGP
VGLPGPAGPPGVAGEDGDKGEVGDPGQKGSKGNKGEHGPPGPPGPLGPVGQPGAAGADGE
PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGP
AGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGE
AGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGP
TGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGL
RGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGE
KGDRGLPGPQGSTGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGV
QGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAMLTEGAPGSPGGLEEIFGSL
DSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTA
GGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQNVSYPCSGVAHDGPLRLR
GANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPRRRGGV
LLGPVCFMG
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagccgctgccatcgcctcctcttgctcgtaccgctggtgctggggctg
agcgcggcccccgcctgggcaggtacaccccctgtggatgtactccgggccctgaggttc
ccctccctccctgatggtgtccggagggcaagaggcatctgtccagctgatgtggcctac
cgagtgtcccgacctgcccagctcagcgcacccacccgccagctcttcccaggaggtttt
cccaaagatttctctctgctgactgttgtccggacccgccctggcctccaggctcccctc
ctgactctctacagtgctcagggtgtccaacagctgggcctggagcttggccgacctgtc
cgcttcctgtatgaggaccagaccggacggcctcaacccccggctcagccggtcttccgg
ggcgtcagcctagcagatggcaagtggcaccgtgtggctgtggctgtgaaaggccagtct
gtcaccctcatagttgactgcaagaagcgtgttacccggcctctcccccgaagtgctcat
ccagtgttggacacccatggagtgataatctttggtgcccgtattctggatgaagaagtc
tttgagggtgatgtccaggagcttgtcattgttccgggggtacaagctgcctatgaatcc
tgtgaacagaaggagctggagtgtgaggggggttggaaggagaggcctcagaaacagcag
tctcacagaacccagaggtctccaaagcagcaaccgccaagacttcataggccacaaaac
caggaaccccagcaacagactgctcgtggaccccggggactgaagggagaaaagggggag
cctgcagtgctggaacctggtatgctagttgaggggccccctggcccagaaggccctgcg
ggattgactggtccccgtggcatccagggcaacccaggcccagttggagaccctggcgag
cggggccctcccggccgagcagggctccctggatcggatggggcccctggccctcctggc
acatccctcatgctcccgttccggtttggcagtggcgggggtgacaagggccctgtggtg
gcggcccaggaggctcaggcccaggcgattctgcagcaggcacggctggcgctccgtgga
ccccctggccccatgggatacacaggccgcccagggcccttgggacaacctgggagccct
ggtctgaaaggagaatctggagacctaggacctcagggccccagaggacctcagggcctc
acagggcctcccggcaaggctgggcgaaggggccgagcgggtgccgatggagcccgaggg
atgcctggagaacctggagtgaagggtgaccgaggttttgatggactcccagggctccct
ggggagaagggacacaggggtgatactggtgcccagggtcttcctgggccccctggtgag
gatggagagcggggagacgatggggagattgggcctcgggggctgcctggcgagtcggga
cctcgaggtcttcttggccccaaaggcccacctggtattcctggacccccgggagtccga
ggcatggatggcccccacggtcccaaagggagcttgggaccccagggagagccaggacct
cctggacaacagggcactcctgggacccagggtctgcctgggccccagggtgccattggc
cctcatggagagaagggtcctcaagggaaaccagggctccctggcatgcctggctcagat
ggtcccccgggtcaccccgggaaggaaggtccccctggaaccaaaggaaaccagggtcca
tctggacctcagggtcctctaggatacccgggacctcgaggtgtcaagggtgtggatgga
attcggggtctgaagggtcataagggtgaaaagggtgaggacggctttcctgggttcaaa
ggtgacatgggcgtgaaaggcgacaggggcgaggttggagtccctggttccaggggagag
gatggtcccgaggggccgaagggacgcactggacccactggagaccctgggccccccggg
ctcatgggcgagaagggcaagctgggcgttcctggtctgcctggctaccccggacgccag
ggtcccaaggggtccctgggatttcctggttttcctggagccagcggagagaagggagcc
cggggcctgtcggggaaatcagggcctcggggagagcggggccccacgggtccacggggt
cagcggggaccccgaggcgccactgggaagtctggagctaagggaacatcaggtggtgat
ggcccccatgggccccctggagagaggggtctccctgggcctcagggtcccaatggattt
cctggccccaaaggacctccgggtccctctgggaaggatgggctgccaggacacccaggc
cagagaggagaagtgggtttccaagggaagactggtccccctggccccccaggggtggtg
gggcctcagggagcagcaggagaaaccgggcccatgggggagagaggtcacccaggcccc
ccagggccccctggagagcagggactgactggaacagctggaaaagaaggaacaaagggt
gatcccggtccccctggggccccagggaaggatggtcccgcaggtctgaggggcttccca
ggagagagaggcctcccaggcactgctggtggacctggtttgaagggaaatgaaggtccg
gctggtcctcctggccctgcaggctcccctggggagcgaggtgcagcaggatttggggga
cccattggacccccagggcgcccaggaccgcagggtcctcctggagcagcaggagagaaa
ggtgtcccgggtgagaagggccccattggtcccactggccgtgatggggtgcagggtcct
gtggggcttcctggtcctgctgggcccccaggtgtggcaggagaagatggagacaagggt
gaagtgggagaccctggacagaagggcagtaaagggaacaagggtgaacacggccctcct
ggaccccctggaccccttggtcctgtggggcagcctggagcagcgggagctgatggggaa
cctggagctcggggaccccagggacactttggagccaaaggcgatgaaggaaccagagga
ttcaatgggcccccaggccccattggcctacagggtttgccaggtccttcgggggagaag
ggagaaacaggagatgtgggccctatgggaccacctggccccccaggacctcgaggccca
gctggacccaatggagctgatggtccacaaggtcccccaggaggtgttgggaacctgggt
ccccctggagagaagggagagccaggagagtcaggatctccaggggtccagggcgagcca
ggtgtcaagggtccacgtggggagcgtggggagaaaggagagtccgggcagccaggagag
gccggaccaccagggcctaaaggccccacgggcgatgacggccccaaagggaaccctggt
cctgttggttttcctggtgaccctggccctcctggagaagctggccctcggggccaggat
ggtgcaaagggtgaccgcggagaggacggcgagccaggacagcctggatcccctggtccc
actggggagaatggaccccctggaccacttggaaagcggggtcctgctggcacacctggt
cctgaggggcgacaaggagagaagggagccaagggggatcctggtgctgtgggcgcccca
gggaagactggccctgtgggtcccgcaggcccagcaggaaaacctggtcctgatggtctg
agggggctgccgggttcagtgggccagcaaggccgtcctggagccacaggccaggctggg
cctccaggtcctgtgggacccccagggcttcctggcctccggggtgatgccggagccaaa
ggagagaagggtcacccaggtctcattggactgatcgggccccctggggagcaaggagag
aagggtgatcggggacttcctggccctcagggctccactggacagaagggagagacgggt
atcccaggagcatctggccccatcggtcctggaggtccccctggcctccctggacctgct
ggccccaaaggagctaaaggagccacaggcccagctggacccaagggagagaagggagtg
cagggccctccaggacacccgggccccccaggcgaggtgatccagcccctgcccatccag
atgcccaagaagacccggcgctcagtggatggcagccgcctgatgcaggaagatgaggcc
atgctgacggagggggccccaggcagtcctgggggcttggaggagatctttggctccctg
gactccttgcgggaggagattgagcagatgaggcggccgacagggacccaggacagcccc
gcccgcacctgccaggacctgaagctctgccacccggagctgcccgatggagaatactgg
gtcgaccccaaccagggctgtgctcgggatgccttccgggttttctgcaactttacagca
ggaggggaaacctgtgtgacgcccagggatgatgtcacacagttctcttacgtggactca
gagggctccccggtaggcgtggtccagctcaccttcctgcggctgctcagcgtctcagcc
caccaaaatgtctcctatccatgctctggggtggcccacgatggccccctgaggctccgg
ggtgccaatgaggacgagctgagcccagagaccagcccctatgtcaaggaattcagagac
ggctgtcagacacagcaaggccggacggtgctggaggtgcgaacccctgtgctggagcag
ctgccggtgctggacgcctccttctcagacctgggggccccccggaggcggggaggggtg
ctgctggggcctgtctgcttcatgggctag
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integrated database retrieval system
