Equus caballus (horse): 100062380
Help
Entry
100062380 CDS
T01058
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
ecb
Equus caballus (horse)
Pathway
ecb03430
Mismatch repair
ecb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100062380 (PMS2)
03460 Fanconi anemia pathway
100062380 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecb03400
]
100062380 (PMS2)
DNA repair and recombination proteins [BR:
ecb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
100062380 (PMS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
UfSP_MPN_N
Motif
Other DBs
NCBI-GeneID:
100062380
NCBI-ProteinID:
XP_001494013
Ensembl:
ENSECAG00000014072
VGNC:
51217
LinkDB
All DBs
Position
13:5347312..5371356
Genome browser
AA seq
868 aa
AA seq
DB search
MEGAEGPSTELAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDAGATNIDLRLKD
YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDV
TISTCHASAKVGTRLVFDHNGRIVQKTLYPRPRGTTVSVQQLFYTLPVRHKEFQRNIKKE
YAKMIQVLHAYCIISAGVRVSCTNQVGQGKRQPVVCTSGSTSIKENIGSVFGQKQLQSLI
PFVQLPPSDSVCEEYGLSCSDALHNLFCISGFISRCTHGVGRSSTDRQFFFINRRPCDPA
KVSRLVNEVYHMYNRHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLI
GMFDSEVNKLNVNQQPLLDTEGNLIKIHSAEVEQPLPEKQDRPASSRTRGEEKRAVTICR
LREAFSLHHATGSKSQGQKAAEPRRISPRQKRSAQFRSTSDSLCPQKPVSATGSSSPREE
ATSSEEDACDRTDKVEKDSGHSSTSAGSGEASSTPETGRHSSSDRTASSPEDRFSQENVE
SCQKLPETGHRFSDTERHLGHEDSGSKFRVLPQPTNLTASNTKRLKKEEIPLNSDILPEL
VNTQSPSVSQVDVAVTINKKIVPLDFSMSSLAKQIKRLHHQEQKRAGEQNYRRFRAKICP
GENQAAEDELRKEISKTMFAEMEIIGQFNLGFIITKLDADIFIVDQHATDEKYNFEMLQQ
HTVLQGQRLIAPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDEGAPVTERAKLISLPTSK
NWTFGPQDVDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNASEMRKLITHM
GEMDHPWNCPHGRPTMRHIANLDVISPN
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggagggggccgaggggccgagtacagaacttgccaaggccatcaaacctattgatcgg
aagtcagtccatcagatttgttccggccaggtggtactgagtctcagcaccgctgtgaag
gagttggtcgaaaacagtgtggatgccggtgccactaatattgatctaaggcttaaagac
tatggggtggacctcattgaagtttcagacaatggatgcggggtagaagaagaaaacttt
gaaggtttaactctgaaacatcatacttctaagattcaagagttcgctgacctaacccag
gtggaaactttcggcttccggggggaagctctgagttcactttgtgccctgagcgatgtc
actatttctacctgccacgcgtctgcaaaggtgggaactcgactggtgtttgatcacaat
gggagaattgtccagaaaaccctctacccacggcccagagggacgacggtcagtgtccag
cagttgttttatacgcttcctgtgcgccataaggagtttcagaggaatattaaaaaggag
tatgccaaaatgatccaggtcttacatgcctactgtatcatttcagcaggcgtccgtgta
agttgcaccaatcaggttggacaaggaaagcgacagcctgtggtgtgcacaagtggaagc
accagcatcaaggaaaatattggatcagtgtttgggcagaagcagttgcaaagcctcatt
ccttttgtgcagctgccccctagtgactccgtctgtgaagagtacgggctgagctgttct
gatgctctgcataatctgttttgcatctcaggtttcatttctcgctgtactcatggtgtt
ggaaggagttcaacagacagacaatttttctttatcaatcgacggccttgtgacccagca
aaggtttccagactcgtgaatgaggtctatcacatgtataatcgacatcagtatccattt
gttgttcttaacgtttctgttgattcagaatgtgttgatatcaatgttactccagataaa
aggcaaattctactccaagaggagaagcttttgttggcagttttaaagacgtctttgata
ggaatgtttgatagtgaggtcaacaaacttaatgtcaatcagcagccgctgctggatact
gaagggaacctaataaaaatacactcagcagaggtggaacagcctttgccagaaaagcag
gatcgtcccgcatcgtccaggactcgaggggaggagaagcgggcggtgaccatttgcaga
ctgagagaggccttttcccttcatcacgcgacagggagcaagtctcagggccagaaggct
gctgagcccagacggatttctccaagacagaaaagaagcgcacagtttcgtagcacttcc
gactccctctgcccccagaagcccgtctctgccacaggctcgtccagcccccgggaagag
gcgacgagctcagaggaggatgcctgtgaccgcacggacaaagtggagaaggactcaggg
cacagcagcacttcagccggctcaggggaagcgtccagcaccccagaaacgggccgccac
tccagcagtgaccgcacagcaagctcccctgaagacaggttttcacaagaaaatgtggag
tcttgtcagaagttacctgaaactggccatcgtttttcagacacagaacgccatttaggc
catgaagatagtggatctaaatttagagttttgcctcagccaactaatctcacagcctca
aacacaaagcgtttgaaaaaagaagaaattcctttaaattctgacatccttccagagttg
gttaacactcagagcccgtcagtttctcaagttgatgtagctgttacaattaacaagaaa
atagtgccccttgacttttctatgagttctttagctaaacaaataaagcggttacatcac
caagaacaaaaaagagcaggtgaacagaattataggaggtttagggcaaagatttgccct
ggagaaaatcaagcagcagaagatgaactaagaaaagagataagtaagacgatgtttgca
gaaatggaaatcattggccagtttaacttgggatttataataaccaaactggatgccgac
atcttcatagtggaccagcacgccacggatgagaaatacaacttcgagatgctccagcag
cacactgtgctccagggtcagaggctcatagcaccgcagactctcaacttaactgccgtc
aatgaagctgttctgatagaaaacctggaaatattccgaaagaatggctttgattttgtt
atcgatgaaggcgctccagtcactgaaagggctaaattgatttccttgccgaccagtaaa
aactggacctttggccctcaggacgtagatgaactgatcttcatgctgagtgacagccct
ggggtgatgtgccggccttcccgagtcaggcagatgtttgcctccagagcctgtcgaaag
tctgtgatgatcggaaccgcgctcaacgcgagcgagatgaggaagctcatcacccacatg
ggcgagatggaccacccctggaactgcccccacggaaggcccaccatgcggcacatcgcc
aacctggacgtcatttctccaaactga
DBGET
integrated database retrieval system
