Equus caballus (horse): 100062843
Help
Entry
100062843 CDS
T01058
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
ecb
Equus caballus (horse)
Pathway
ecb04140
Autophagy - animal
ecb04142
Lysosome biogenesis
ecb04148
Efferocytosis
ecb05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
100062843 (VPS41)
04140 Autophagy - animal
100062843 (VPS41)
04148 Efferocytosis
100062843 (VPS41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100062843 (VPS41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecb04131
]
100062843 (VPS41)
Membrane trafficking [BR:
ecb04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100062843 (VPS41)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
VPS18_solenoid_2nd
zf_RING_Vps8_fungal
WD40_CDC20-Fz
WD40_Prp19
ANAPC4_WD40
Beta-prop_THOC3
Beta-prop_EML_2
Vps39_1
Beta-prop_HPS5
WD40_WDHD1_1st
Beta-prop_RIG_2nd
TPR_PEP5_VPS11
Beta-prop_WDR3_2nd
zf-RING_5
Beta-prop_IFT122_1st
zf_RING_Vps8
Frtz
TPR_YpiA
CFAP251_N
Beta-prop_ACSF4
RIG-I_C
Beta-prop_IFT140_2nd
zf-RING_11
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
100062843
NCBI-ProteinID:
XP_005609146
Ensembl:
ENSECAG00000006943
VGNC:
24930
LinkDB
All DBs
Position
4:complement(10171507..10350180)
Genome browser
AA seq
854 aa
AA seq
DB search
MAEAEEQETESLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH
ETFDCPIKIIAVHPQYVRSSCKQFVTGGKKLLLFERSWMSRWKSSVLHEGEGNIRSVKWR
GHLIAWANNMGVKIFDITSKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKI
CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEVSEKTEREYCA
RPRLDIIQPLAETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
DQDDHIDWLLEKKKYEEALMAAEISQRNIKRHKILDIGLAYINHLVEKGDYDIAARKCQK
ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
REWPGDLYNNSVIVQAVRDHLKKDSQNRTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
KGVLVDEENICESCLSPILPSDAAKPFSVVIFHCRHMFHKECLPVPSMASPAQFCNICSA
KHRGPGSAILEMKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcagaggagcaggaaactgagtctcttgaagaatctacagatgagtctgag
gaagaagagagtgaagaggaacccaaactgaagtatgaaaggctttccaacggggtgaca
gaaatccttcagaaggatgcagctagctgcatgacagtccatgacaagtttttggcactt
ggcacacattatggcaaggtttatttacttgatgtccaggggaacatcactcagaagttt
gatgtaagtcctgtgaagataaatcagattagcctggatgaaagtggagaacacatgggc
gtctgttcagaggatggcaaggtgcaggtgtttggactgtattctggagaagaatttcat
gagacttttgactgtcctattaaaatcattgctgtgcacccgcagtacgtgaggtccagc
tgcaagcagtttgtgaccggagggaagaagttgctgctgtttgaacgatcttggatgagc
aggtggaagtcttcagttctgcacgaaggggaaggaaacataaggagtgtgaagtggaga
ggccacctgattgcttgggccaataacatgggtgtgaagatttttgacatcacctcaaag
cagagaatcaccaatgtgccccgggacgatatcagtcttcggccagatatgtacccctgc
agcctgtgttggaaggacaacgtgacactgattattggctgggggacatctgtcaagata
tgctcagtgaaggaacggcatgccagtgaaatgagggacttgccgagtcgatatgttgaa
atagtgtctcagtttgaaaccgaattctacatcagtggacttgcgccgctctgtgatcag
cttgttgtactgtcctacgtcaaggaggtttctgaaaaaacggaaagagaatactgtgcc
aggcccagattggatattatccagccacttgccgagacttgcgaagagatctcttccgat
gctctgacagtgaggggctttcaggagaatgaatgtagagattatcatctagaatactcc
gaaggggaatcactcttttacattgtgagtccaagagacgttgtagtagccaaggaacga
gaccaagacgaccacatcgactggctccttgaaaagaagaaatatgaagaagctttgatg
gcagctgaaattagccaaaggaacattaaaagacataagattctggatattggcttggca
tatataaaccacctggtggagaaaggagactatgacatcgcagcacggaaatgccagaaa
attcttgggaaaaatgcagcactctgggaatatgaagtttataaatttaaagaaattgga
cagcttaaggctattagtccttatttgccaagaggggatccagttctgaaaccactcatc
tatgaaatgatcttacatgaatttttggaaagtgattatgagggttttgccacactgatc
cgagaatggcccggagatctgtacaacaattcagtaatagttcaagcagttcgggaccac
ctgaagaaagacagtcagaacaggaccttacttaaaaccctggcagaattgtacacctat
gacaaaaactatggcaatgccctggaaatatacttaacattaaggcataaggatgttttc
cagttgatccacaagcacaatcttttcagttctatcaaggataaaattgttttattaatg
gattttgattctgagaaagctgttgacatgcttttggacaatgaagataaaatttcaatt
aaaaaagtagtggaagaattagaagacagaccagagttgcagcacgtgtatctgcataag
cttttcaagagagaccatcataaggggcagcgctaccatgaaaaacagatcagcctttat
gctgaatatgatcgaccaaacttgcttccatttctccgagatagtacccattgcccgctt
gaaaaggctcttgagatctgtcaacagagaaactttgtagaagagaccgtgtatcttctg
agccgaatgggcaatagccgaagtgccctgaagatgatcatggaggaattacatgatgtt
gataaagcaattgaatttgccaaggagcaagacgatggagaactctgggaagacctgatt
ttatattccatcgacaaaccaccatttattactggcttgttaaataacattggcacgcac
gttgacccaattctgctgattcaccgcattaaggaaggaatggagattcccaatttgaga
gattccttggttaaaattctgcaagattacaatttgcaaattctgcttcgtgaaggctgc
aagaagattctcgtagcagactctttgtccttactgaagaagatgcaccgaactcagatg
aaaggtgttctggtcgatgaggaaaacatctgtgaatcgtgtctttccccgattcttcca
tcagatgcagccaagcccttcagcgtggtgatcttccactgccggcatatgtttcacaag
gagtgcctgcccgtgcccagcatggcctcccccgcgcagttctgcaacatttgcagcgcg
aagcaccgcggaccgggaagtgccatcctggagatgaaaaagtag
DBGET
integrated database retrieval system
