Equus caballus (horse): 100063277
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Entry
100063277 CDS
T01058
Symbol
CPSF1
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1 isoform X1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
ecb
Equus caballus (horse)
Pathway
ecb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100063277 (CPSF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecb03021
]
100063277 (CPSF1)
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100063277 (CPSF1)
Transcription machinery [BR:
ecb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100063277 (CPSF1)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100063277 (CPSF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
UspB
Motif
Other DBs
NCBI-GeneID:
100063277
NCBI-ProteinID:
XP_001505047
Ensembl:
ENSECAG00000022209
VGNC:
16833
LinkDB
All DBs
Position
9:complement(85143038..85160671)
Genome browser
AA seq
1444 aa
AA seq
DB search
MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEAPTKNDRNAEGK
AHREHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKT
LSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLM
GEGQRSSFLPSYIIDVRALDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDT
CSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYG
VALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSV
RAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAAEKEEP
PSKKKRVDSTVGWSGGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANA
AMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTV
IAPVRKEQEETPKGEGTEQEPSAPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSG
FATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGSPIVQCAVADPYVVIM
SAEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCVYRDVSGMFTTESRLGGARD
ELGGRSGLEAEGQGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPTPFRA
DPTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARKEEATR
QGELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNI
NFREKKPKPSKKKAEGGGAEEGVGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRG
ALRLHPMGIDGPIDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLR
CTAHYVAYHVESKVYAVATSTNTPCTRIPRMTGEEKEFETIERDDRYIHPQQEAFSIQLI
SPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRI
LIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASE
LTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVD
FMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGA
AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPR
AFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDIILDDLLETDRV
TAHF
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgtacgccgtgtacaagcaggcgcacccgcccaccggcctcgagttctccatgtactgc
aacttcttcaacaacagcgagcgcaacctcgtggtggccgggacctcgcagctctacgtg
taccgcctcaaccgcgacgccgaggcgccaaccaagaatgacaggaatgcagaggggaag
gcccaccgggagcaccgagaaaagttggagctcgtggcttccttctccttctttggcaac
gtcatgtccatggccagcgtgcagctggcgggcgccaagcgggatgccctgctcttgagc
ttcaaggatgccaagctgtccgtggtggagtatgacccaggcacccatgacctgaagacc
ctgtctctgcactactttgaggagcctgagctgcgggacgggtttgtgcagaatgtgcac
acgccacgggtgcgggtggaccccgatgggcgctgtgcggccatgctcatctacggcacg
cggctggtggtcctgcccttccggagggagagcctggctgaggagcacgaggggctcatg
ggtgaggggcagaggtccagcttcctgcccagctacatcatcgacgtgcgggccctggac
gagaagcttctcaacattgttgacctgcagttcctgcacggctactacgagcccaccctg
ctcatcctgttcgagcccaaccagacctggcctgggcgggtggctgtgcggcaggacacg
tgttccatcgtggccatttcactgaacatcacgcagaaggtccaccctgtcatctggtcc
ctcaccagcctgcccttcgactgcacccaggcccttgctgtgcccaagcccataggtggg
gtggtggtctttgctgtcaactcactgctgtacctgaaccagagtgtccctccatacggc
gtggctctcaacagcctcaccaccggcaccactgccttccccctgcgcacccaggagggc
gtgcggatcactctcgactgtgcccaggcggccttcatctcctatgacaagatggtcatc
tccctcaagggtggcgagatctacgtgctgaccctcatcaccgatggcatgcgtagcgtc
cgcgccttccacttcgacaaggctgccgccagtgtcctcaccaccagtatggttaccatg
gagcccgggtacctgttccttggctctcgcctgggcaactccctcctcctcaagtacacg
gagaagctgcaggagcccccagccagtgctgtccgcgaggccgctgagaaggaagagcct
ccctcaaagaagaagcgagtggactccacagtgggctggtcagggggcaagtcggtgcca
caggacgaggtggatgagatcgaggtgtacggcagcgaggcccagtctggcacacagctg
gccacttactcctttgaggtgtgtgacagcatcctcaacatcggaccctgtgctaacgcg
gccatgggcgagcccgccttcctctctgaagagtttcagaacagccccgagccagacttg
gagatcgtggtgtgctccggttacgggaagaatggggccctgtcagtgctgcagaagagc
atccggccccaggtggtgacaacctttgaacttcctggctgctatgacatgtggacggtc
atcgcccctgtacggaaggagcaggaggagacccccaagggtgaggggacagagcaggag
cccagcgctcctgaagcagatgatgacgggcgaagacatgggttccttattctgagccgg
gaagactccactatgatcctgcagacggggcaggaaatcatggagctggacaccagtggc
tttgccacgcagggccccacagtctttgctggcaatatcggtgacaatcgctacatcgtg
caagtgtcgccgctcggcatccgcctgttggaaggagtgaaccagctgcacttcatcccc
gtggacctgggttcccccatcgtgcagtgtgctgtggccgacccctacgtggttatcatg
agtgctgagggccatgtcaccatgttcctgctcaagagcgactcatatgggggccgccac
caccgcctggcgctgcacaaacccccgctgcaccaccagtccaaggtgatcacgctctgc
gtgtaccgtgatgtcagcggcatgttcaccaccgagagccgcctgggaggggcccgcgat
gagctggggggccgcagtggcttggaggcggagggccagggctcggagaccagccccaca
gtggatgatgaggaggagatgctgtacggggactcgggctccctcttcagccccagcaag
gaggaggcccgcaggagcagccagccccctgcagaccgggaccccacccccttccgggcc
gaccccacccactggtgtctgctggtgcgggagaacggaaccatggagatctaccagctc
cctgactggcggctggtgttcttggtgaagaactttcccgtggggcagcgggtcctggta
gacagttccttcggtcagccgaccacacagggcgaggcccgaaaggaggaggccacgcgc
cagggcgagctgcccctcgtcaaggaggtgctgctggtggcactggggagccgccagagc
aggccttacctgctggtgcacgtggaccaggagctgctcatctacgaggccttcccccac
gactcgcagctcggccaggggaacctcaaagtccgctttaagaaggtcccccacaacatc
aacttccgtgagaagaagccaaagccgtccaagaagaaggcagaaggcggcggcgccgag
gagggtgttggggcccgcggccgcgtggcgcggttccgctactttgaggacatttatggc
tactcgggggtattcatctgtggcccctcaccccactggctcctggtgaccggccgaggg
gccctgcggctgcaccccatgggcattgatggccccattgactcctttgctccattccac
aatgttaactgcccccgaggcttcctgtacttcaacagacagggcgagctgaggatcagc
gtcctgcctgcctacttgtcctacgatgccccgtggcctgtcaggaagatccccctgcgc
tgtacagcccactatgtggcttaccacgtggagtccaaggtgtatgctgtcgccaccagc
accaacacaccatgcacgcgcatcccgcgcatgacgggcgaggagaaggagtttgagacc
atcgagagagatgaccggtacatccacccccagcaggaggccttctccatccagctcatc
tccccagtcagctgggaagccatccccaacgccaggatcgagctggaggagtgggagcat
gtgacgtgcatgaagacagtgtcgctgcgcagtgaggagaccgtgtcaggcctcaagggc
tacgtggccgctgggacttgcctcatgcagggggaggaggtcacgtgccgcgggcggatt
ctgatcatggacgtgattgaggtggtgcccgagcctggccagcccctgaccaagaacaag
ttcaaggtcctgtatgagaaggaacagaagggccccgtgactgcgctgtgccattgcaat
ggccacctggtgtcggccattggccagaagatcttcctgtggagcctacgggccagtgag
ctgacgggcatggctttcatcgacacccagctctacatccaccagatgatcagcgtcaag
aacttcatcctggctgcggacgtcatgaagagcatctcactgctgcgctaccaggaggag
agcaagacgctgagcctcgtgtcccgggatgccaaacccctagaagtgtacagcgtggac
ttcatggtggacaacgcccagctgggcttcctggtgtctgaccgcgaccgcaacctcatg
gtgtacatgtacctgccggaagccaaggagagcttcgggggtatgcgcctgctgcgccgg
gcggacttccatgtgggtgcccacgtgaacaccttctggaggactccatgccggggggct
gccgaggggcccagcaagaagtcagttgtgtgggagaacaagcacatcacgtggttcgcc
acactggacggcggcattgggctcctgctgcccatgcaggagaagacctaccggcggctg
ctaatgctgcagaacgcactgaccaccatgctgccccaccacgccggcctcaacccccgt
gccttccggatgctgcacgtggaccggcgcatcctacagaacgctgtgcgtaacgtcctg
gatggggagctgctcaaccgctacctgtacctgagcaccatggagcgcggcgagctggcc
aagaagatcggcaccacgcccgacatcatcctggatgacctgttggaaacagatcgtgtc
accgcccacttctag
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integrated database retrieval system
