Equus caballus (horse): 100063829
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Entry
100063829 CDS
T01058
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain isoform X1
KO
K08135
collagen type XV alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100063829 (COL15A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ecb00535
]
100063829 (COL15A1)
Proteoglycans [BR:
ecb00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100063829 (COL15A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100063829
NCBI-ProteinID:
XP_005605710
Ensembl:
ENSECAG00000021211
VGNC:
16725
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Position
25:5740354..5842637
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AA seq
1380 aa
AA seq
DB search
MVHTQEPVSTHVKGGRELTTRTQRESASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSF
GPGANVGRPARTLIPPTFFRDFAISVTVKPNSARGGVLFAITDAFQKVIYLGLRLSGAED
GHQRVILYYTEPGSQVSHEAAAFLVPVMTHRWNRFAVIVRGEEVSLLVDCEEHSPVPFQR
SSQPLAFEPSAGIFVGNAGATGLERFTGSIQQLTVHPDPGTPEELCEAEESSASGETSGL
QETDGVAEILEAVTYTQAPSKEAQVEPISTPPTLSPPSEDAELSGEPVPEGTLETTKLSE
PVPEGTPETTNLSVIPHSSPEQGSGEIMNDTLEGAQTVDGAPITDVGSGDGAILHVIEEG
PHPEEGLATTAAAGEAEVPVSTAEEAEASGVPTGGPTLSTFTEDPGERVTPGLDTEEGSA
ATAAEEAEVPIGTAGEVEADTVRTGGPTLSTSTQDPGEGVTLGPISEESLTTAVAATEVA
LSTFEEEEASGVPTDGLVPLTPTVPSEQVVPSGPGDEEDLAAATTEEPLTAAGAEETGGA
LPEGPPLPIPTVAPERGVTPGGAEEVLSGPPGTAEPAGPTVRAEAEGSGLAWGLDLGSGS
GSDDLVRSEELLRGPPGPPGPPGSPGIPGKPGTDIFMGPPGSPGEDGAAGEPGPPGPEGQ
PGLDGASGLPGMKGEKGARGPNGSVGEKGDPGSRGLPGPPGKNGQVGTPGVMGPPGPPGP
PGPPGPGCATGLGFEDTEGSGSIRLLHEPRISGPTASSGPKGEKGDQGPKGDRGMDGASI
VGPPGPRGPPGRIEVLPSSLINITHGFKNLSDIPELMGPPGPEGMPGLPGFPGPRGPKGD
TGVPGFPGLKGEQGEKGEPGTILTGDVPLERLRGMKGEPGAHGAPGPMGPKGPPGHKGEF
GLPGRPGRPGLNGLKGAKGDRGLMMPGPPGLPGPPGPPGPPGAVINIKGAVFPIPIRPHC
KTPVGTTHPGNSELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNS
LKGENGDRGLKGEKGDSNGDFLVSGPPGLPGNPGLVGQKGETVIGPQGPPGAPGLPGPPG
FGRPGSPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTAFSSMDDMLQNA
HLVIEGTFIYLKDSAEFFIRVRDGWKKLQLGELIPIPADSLPPPALSSNPHQPQVPLTSV
SSVTYERPALHLVALNTPFSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTVVRKA
ERYSLPIVNLKGQVLFNNWDSVFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKAVWHGSS
PRGVRLVDKYCEAWRTADTAVTGLASPLSTGKILDQKTYSCANRLIVLCIENSFMTDARK
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggtccacacccaggagcccgtgtctactcatgtcaagggaggaagggaactaaccacc
agaacgcagagagaatcggcttcccagggccacctggacctcacggagctcattggcgtc
ccactgccctcgtccgtgtcctttgtcaccggctatggtggcttcccagcctacagcttt
gggcctggcgccaacgtcggccgcccagccaggaccctcatcccgcccaccttcttcagg
gactttgccatcagcgtcacggtgaaacccaacagtgcccgaggcggtgtgctctttgct
atcaccgatgccttccagaaggtcatctacctgggcctgcggctctcgggcgctgaggat
ggccaccagcgggtcatcctatactacacggagcctggctcccaagtgtcccacgaggct
gctgccttcctggtgcccgtgatgacccacaggtggaaccgctttgccgtgatcgtccga
ggcgaagaagtgagcctcctcgtggactgcgaggagcacagccccgtccccttccagcgg
tcttcgcagcccttggcttttgagcccagtgcgggaatcttcgtgggcaacgcgggagcc
acggggctggagagattcacgggctccatacagcagctcactgtccacccggaccccggg
actcctgaggagctgtgtgaagctgaagaatcctcggcgtcgggagagaccagcgggctc
caggagacagacggagtggctgagatcttggaggccgtcacctacacccaagccccgtct
aaagaagcacaagttgaacccataagcacacctccaactctatcccctccgtctgaggat
gcagagctttccggtgagcctgtacctgaggggaccctggaaaccaccaagttgagtgag
cctgtacctgaggggaccccggaaaccactaatttgagcgtcatcccgcacagcagccct
gagcaaggctctggtgagatcatgaatgacacgctggaaggagctcagacagtggatggt
gcccccatcacagacgtcggctcaggagacggagccatccttcatgtcatcgaagagggt
ccccatcctgaagaaggtttggcaacgacggcagcagctggggaggccgaggtgcccgtc
agcactgccgaggaagcagaggccagcggtgtgcccactgggggacccaccctctccacg
ttcactgaggaccctggggaaagggtcactccgggtctggacaccgaggaaggttcggca
gcaacagcagccgaggaggccgaggtgcccatcggcactgccggggaagtagaggccgac
actgtgcgcaccgggggaccgaccctctccacgtccacccaggaccccggggaaggggtc
acgctgggtccaatcagtgaagaaagtttgacaacagcagtagctgcaacagaagtggcc
ctcagcaccttcgaggaagaggaggccagcggggtccccacagatggcctggttcccctc
acacccacggtgccctctgagcaagtggtcccttccggtcctggtgatgaagaagacttg
gcagcagccacgacggaggagcccctgacagcggcgggggcggaggagacgggcggcgcc
ctgccggaggggcctccgctccccatacccacagtggctcctgaaagaggggtcactccg
ggtggagctgaggaggtactttctggcccccctggaactgctgagcctgccggacccacg
gtgagagcggaggctgagggctccggcctggcctggggcttggacctcggctctggctct
ggctctgacgacctggtgcgcagcgaggagctgttgaggggtcccccaggccccccaggc
ccacctggctcacctgggattccaggaaaaccaggaactgatattttcatgggcccccct
ggatctcctggagaggatggagctgctggtgaacctgggcctccgggccctgagggacag
cctggactcgatggagcctctggccttcctgggatgaaaggggagaagggagcaagaggg
cctaatggctcagttggtgaaaagggtgaccctggcagcagaggcttaccaggacccccc
gggaagaatggacaagtgggcactcctggggtcatgggacccccagggcctcccggaccc
cctgggcccccaggccctggatgtgcaacgggacttggattcgaggataccgaaggctct
gggagcatcaggctgttgcatgaacccagaatctctggaccaacagcttcaagtggtccc
aaaggagagaagggagaccagggacccaagggtgacagagggatggatggagccagcatc
gtgggaccccctgggccccgggggccaccggggcgcatcgaggtcttgcctagttctttg
atcaacatcacccacggattcaagaatctctcggacattcctgagctcatggggcctccg
ggcccggagggcatgcctgggctgccaggatttccaggccctagaggaccaaaaggtgac
actggcgtgcctggatttccaggactaaaaggagaacagggcgagaagggcgagccgggc
accatcctgacgggggacgttcctctggaaaggctgagggggatgaagggtgaacctgga
gcgcatggagccccgggaccaatgggacccaaaggaccgccaggacacaaaggggaattt
ggccttcccggacgacccggtcgcccgggactgaacggcctcaagggcgccaaaggcgat
cgagggctcatgatgccgggcccacctggcttacctggtcctccgggtcctcctggcccc
cctggagctgtgattaacatcaaaggagctgtcttcccaataccaatccggccacactgc
aaaacgccagttggtaccactcatcctgggaattcagaactcatcacctttcatggtgtt
aaaggagagaaaggatcctggggtcttcctggctcaaaaggagaaaaaggcgaccagggg
gcccagggaccaccaggccctccagtggatccagcctacctgagacattttctgaacagc
ttgaagggggagaatggagacagggggctcaaaggagaaaaaggagactctaacggtgac
ttcttggtgtcaggccctcctggcctgccgggaaatccaggcctggttggccagaaaggg
gagaccgtcatcgggccccagggacccccgggtgctcctggcctgcctgggccacctgga
tttggaagacctggttcccctgggccaccgggacccccagggccaccaggacctccggct
atcctgggagcagccgtggcacttccaggcccgcctggccctccaggacagccaggactt
cccggatccagaaacctggttacagcatttagcagcatggatgacatgctgcagaacgcg
catttggtgatagaagggacattcatctacctgaaggacagcgctgagtttttcattcgt
gtcagagatggttggaaaaaattacagctgggagaactgatccccattccagccgacagc
cttccgccccctgcgctttccagcaacccgcatcagcctcaggttccactgacgtctgtt
tccagtgtcacttatgagaggcctgcactgcacttggttgctctgaacacgccattttct
ggggaccttcgagctgatttccagtgcttccagcaggccagggctgcgggcctgttgtcc
acctaccgagcgttcttatcctcccatttgcaagatctctccacagtcgtgagaaaagcg
gagagatacagccttccgatagtgaacctcaagggccaagtgctttttaataattgggac
tcagttttttctggccatggaggtcagttcaatacccatgttccgatatattcctttgat
ggccgagacgtaatgacagatccttcttggccccagaaggccgtttggcacggctccagc
ccccgtggcgtgcgtcttgtggataagtactgtgaagcctggcgaaccgccgacacggcg
gtcacggggctggcctccccgctgagcacggggaagatcctggaccagaaaacgtacagc
tgcgctaataggctcatcgttctgtgtatcgaaaacagtttcatgacagacgctaggaag
taa
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