Equus caballus (horse): 100063903
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Entry
100063903 CDS
T01058
Symbol
COL24A1
Name
(RefSeq) collagen alpha-1(XXIV) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04820
Cytoskeleton in muscle cells
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100063903 (COL24A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100063903 (COL24A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecb00536
]
100063903 (COL24A1)
Glycosaminoglycan binding proteins [BR:
ecb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100063903 (COL24A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100063903
NCBI-ProteinID:
XP_023497504
Ensembl:
ENSECAG00000023199
VGNC:
16735
LinkDB
All DBs
Position
5:74724997..75074201
Genome browser
AA seq
1709 aa
AA seq
DB search
MHLGAHRTRRGKVSHTAKTKLLLHFIVLCVAVGTVHAQEQGIDILHQLGLGGKDVRHSSS
VTAVPSSSTPFPQGVHLTESGVMLTNDAYIESPLMKILPINLEQPFTILIGLQSHRVNNA
FLFSIRNKNRLQLGIQLLPKKLVVYLGGKQTVFFNYSVHDERWHSFALTIRNQVVSMFVE
CGKKYFSKETLLEVQTFDSNSVFTLGSVNNNSVHFEGIVCQLDIIPSSEASADYCRYVKQ
QCRPETSLLHTTIVPARILENSPLPKQFGQRVLSEDSLTEGKSIPTIINNNSATVHKQQE
LQISRSQLTSLHSGNVSAVDLVNHGTQAREAITEEHTQTNLNLSMTHHRLSQARTNSKEK
LSSLLTVSDNITQNNNKVSGLSPFKKISSVLSHIKQDTITNLKKAITTNLHTNELMELQE
ILNTTLYRVTDEPSVDNHLDLRKEGESDSHATYPIENSYETGLYDYYYYYEDLNAVPEME
NLRGPKGDPGPPGPPGPAGIPGPSGKRGPRGIPGPHGNPGLPGLPGAKGPKGDPGFSPGQ
AVSGEKGDRGLSGLMGPPGMQGDKGAKGHPGLPGLRGEQGIPGLTGNIGSRGYPGRQGLA
GPEGNPGPKGIRGFIGSPGEVGQLGPEGERGVPGVRGKKGLKGRQGFPGDFGDRGPAGPD
GSPGLVGSVGPPGFPGLTGSVGPMGPIGPSGTPGPMGLSGNKGLPGIKGDKGEQGTAGDP
GEPGDPGDKGAVGFLGPPGMRGKPGTSGQIGDPGPQGPLGPPGPEGFPGDIGIPGQNGPE
GSKGLLGHRGPPGPPGLKGTQGEEGPIGPFGELGPRGKPGQKGYAGEPGPEGLKGEVGDQ
GNIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPQGPQGEKGIMGYPGPPGVPGPIGPL
GLPGHVGARGPPGSQGPKGRRGPRGPDGLSGEQGIQGAKGEKGDQGKKGPYGLIGKTGNP
GERGVQGKPGLQGPPGSTGDRGLAGEPGPRGLQGDPGAPGEMGAEGLSGIEGESGLQGEP
GAKGDVGPAGSVGVAGEPGLRGEPGAAGEEGLQGKDGLKGDPGERGFPGEDGEKGETGLP
GATGPLGRPGLMGPPGPEGIVGILGQRGRPGKKGDKGQIGPTGEIGSRGAPGKIGESGPK
GARGTRGAVGHLGLMGPNGEPGIPGYRGHQGQPGLSGLPGPKGEKGYPGEDNTILGPPGP
RGEPGPMGEQGERGEPGAEGYKGHVGIPGPRGATGQQGPPGEPGDCGEQGLKGERGSEGP
KGKKGAPGPSGKPGIPGLPGLPGPKGVQGYHGADGISGNPGKAGLPGKQGLPGIRGSPGR
AGLVGSPGPRGAKGSSGLPGSPGVPGPKGEQGLTGQPGIQGKRGQRGAQGDQGPCGEPGL
KGQPGEHGVQGLTGFQGFPGPKGPEGDAGIVGISGPKGPLGQRGNTGPLGREGIIGPTGR
TGPRGEKGFRGETGPQGPRGHPGPPGPPGAPGPKKQMDINAAIQALLESHTALQMESYQN
TEMTLIDYSAEIFKTLKYLSNLLHSIKNPLGTRDNPARICKDLLNCEHKVSDGRYWIDPN
LGCPSDAIEVFCNFSAGGQTCLSPVSVTKLEFGVGKVQMNFLHLLSSEATHIVTIHCLNA
PVWTGAQTSGSGLPVGFKGWNGQIFKENTLLEPKVLSDDCKIQDGSWHKAKFLFHTQDPN
QLPVIEVQKLPHLKTKRKFYIESSAVCFL
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagcccacaggacaaggcgtggaaaggtctcccacacagcaaaaacgaaa
ctgcttcttcattttattgtgctatgtgtggcagtgggcactgttcatgcacaagaacaa
ggcatagatattcttcatcaactaggccttggaggcaaagatgtaagacactcatcatca
gtgactgctgtaccatcatcatctacaccattccctcagggggtccatttaacagaatca
ggtgtcatgttaacaaatgatgcttacattgagtcacctctcatgaaaattttaccaatc
aacttagaacagccatttacaatattaatcgggttacagtcacatagagtaaacaatgca
tttctcttcagcattagaaataaaaatagactgcaattaggaatacaattattacctaaa
aagttagtggtgtaccttggaggaaagcagactgtatttttcaactacagtgttcatgat
gagcgatggcactcatttgctcttactattagaaaccaagttgtctcaatgtttgttgag
tgtggaaagaaatattttagcaaagagactcttttggaagttcagacctttgattctaac
agtgtgtttaccttaggaagtgtgaataataattctgtccattttgaaggaatagtgtgt
cagttggatattattccttcatcagaagcatctgcagactattgcagatatgtgaaacaa
cagtgtcgccctgagacaagccttcttcatacaactatcgtaccagctaggatactggaa
aactctcccttgcccaaacaatttggtcaaagagtgctgtcagaggactcacttactgaa
ggcaaaagcattccaactatcataaataacaattctgcaacagtgcataaacaacaagaa
ctccagatatcaagatctcagttaacgtctcttcattcagggaatgtctctgctgtggat
cttgtgaaccatgggactcaggccagagaagcaatcacagaggaacatactcagacaaat
ttaaacctgtcaatgacccatcatcgcctcagtcaggcaagaacaaatagcaaggagaaa
cttagttctctcctaactgtgtccgacaatatcacacagaataataataaagtgagtggt
ctgtcaccatttaagaagatatcatctgttctttcacatataaaacaagatacaattaca
aatctcaagaaggctattacaacaaatctacatactaatgaactcatggaactgcaagag
attttaaacacaaccttatacagagtgacagatgagccatctgtggataatcaccttgat
ctaaggaaggaaggtgaatctgattctcatgctacttatcccatcgaaaatagctatgaa
actggactttatgattattattattattatgaggatcttaatgcagtgcctgaaatggag
aatctgagagggccaaaaggggaccctggacctcccggtccacctggtccagcaggtatc
ccaggtccatcaggaaagagaggtccacggggcataccagggccacatggaaatcctggg
ttacctggattaccaggtgcaaagggccccaaaggagatccaggattttccccaggtcaa
gctgtttctggagaaaagggtgaccgaggcctttctggattaatggggccccctggtatg
caaggtgataagggtgccaaaggacatccagggctcccaggactccgaggtgaacaagga
attccaggactcactggtaatattggttcacgtggttaccctggcaggcagggtttagct
ggaccagaaggtaatccaggtcctaaaggtatacgaggtttcattggctcccctggagaa
gtaggacaactaggacctgaaggagaaagaggtgttcctggggtccgtggaaagaaaggt
cttaagggaagacagggttttccaggtgactttggagacagaggccctgctggtcctgat
ggcagtcctggactcgtaggtagcgttggtcctccgggatttcctggacttacaggcagt
gttggcccaatgggaccaataggaccttctggaactcctggcccaatgggtctttcaggg
aataagggcctacctggaatcaaaggtgataagggtgaacaaggcactgcgggagatccc
ggagaaccaggggatcctggagacaagggtgctgttggtttcctaggaccaccagggatg
agaggaaagccaggaacttcaggccaaataggtgacccaggaccccaaggaccattaggc
cctccaggaccagagggttttccaggagatattgggattcctggacaaaatggccctgaa
ggatcaaagggcctccttggacatagagggcctcctggtcctcccggtctcaaaggaact
cagggagaagaaggaccaattggaccctttggagagctggggccaagaggaaaaccaggt
caaaaggggtatgcgggtgaaccaggaccagaaggcttaaagggagaagtaggagatcaa
ggaaacattggaaagattggggaaacaggacctgttggtttacctggagaagttggaatg
actggaagcattggtgaaaagggagagcgcggaagtccaggtccacagggtccccagggg
gaaaagggtattatgggatatccaggtcctcctggggttccaggacccatcggtccactg
gggttacctggtcatgtgggggcaagaggaccacctgggagtcaaggtcctaaaggacga
agagggccaagaggaccagatggtctctcaggggaacaaggtatacaaggtgccaagggt
gaaaaaggagatcaaggaaaaaaagggccttatggtcttattggtaagactggaaaccct
ggagagagaggagttcaagggaaaccaggtttacaaggaccccctgggagtacaggagac
agaggacttgccggagaaccaggaccacgaggattgcaaggtgatcctggagctcctgga
gaaatgggtgctgagggcctttcgggtattgagggagaatctggtctgcagggcgagcca
ggtgcaaagggagatgttggacctgcaggcagtgttggggttgctggggaaccaggatta
cggggtgaaccaggagctgctggagaagaaggtctccaaggaaaagatggattaaagggg
gatccaggagaaaggggatttcctggagaggatggagaaaaaggagagacaggcttacca
ggggctacagggcctttgggtagaccaggtctaatgggccctccgggacctgaaggaatt
gtgggaattctgggacaaagaggtcgtccaggaaaaaagggtgataaaggacaaataggg
cccacaggagaaattggaagcagaggtgctcctgggaaaattggggaaagtggtcctaag
ggtgccagaggaactcgaggtgctgtgggacatttaggattgatgggacctaatggagaa
ccaggaattccaggatataggggccatcaaggtcaaccaggactttctgggttgccagga
cctaaaggagaaaagggttatccaggagaagacaacacgatcctaggaccacctggccct
cgaggtgaaccaggtccaatgggggaacaaggagagagaggagagcccggagcagaggga
tataagggtcatgtgggtataccaggaccaagaggtgccactggacaacaagggccccca
ggtgagccaggtgactgtggtgaacaaggactaaaaggagagagaggatctgaaggtcct
aaggggaaaaaaggagctcctggtccttctgggaaacctgggattcctggacttccaggc
ctacctgggccaaaaggtgtgcaaggataccatggagcagatggcatttcaggaaaccct
ggaaaagctgggctaccaggaaaacagggccttcctggcatcagaggcagcccaggaaga
gcaggactggttgggtctccaggccctcgaggagcaaagggttcatcaggcctgccagga
agcccaggagttccaggcccaaagggtgaacaagggctaactggtcaacctggaattcaa
ggtaaaagaggtcagcgaggagcacaaggtgatcaaggaccatgtggagagcctggcctg
aaagggcagcctggagaacatggtgtgcaaggtttgacaggtttccaaggattcccaggc
cccaaaggtcctgagggagatgctggcattgttggaatatcaggccctaaaggtcctctt
ggacagagaggaaacactggcccccttggcagagaaggtataataggcccaacaggtaga
actggacccagaggtgaaaaaggctttagaggtgaaactggtccccaaggaccaagaggt
cacccagggcctccaggtccacctggagcaccaggcccaaaaaaacaaatggatatcaac
gctgctattcaagccttgctcgagtcacatactgccctacagatggagagctaccagaat
actgaaatgactttaattgactacagtgcagagatattcaaaaccctgaagtaccttagc
aatttactgcacagcatcaagaatcctcttggcacacgagataacccagcacgaatctgc
aaagatttgcttaactgtgaacacaaagtatcagacggaagatactggattgatccaaat
cttggatgcccttcggatgccattgaggttttctgcaatttcagtgctggtggtcagaca
tgtttatctcctgtttctgtgacaaagttggagtttggagttgggaaagtccagatgaac
ttccttcatttactgagctcagaagccacccacatcgtcaccattcactgtctaaacgct
ccagtgtggacgggtgctcagacaagtggctcaggattgcctgttggtttcaagggatgg
aatggccagatttttaaagaaaacactctacttgaacctaaagtgctttcagatgactgc
aagattcaagatggcagctggcataaggcaaaattcctttttcacacccaggaccctaat
caacttccagtaatcgaagttcaaaaacttccccatctcaaaacaaaacggaagttctac
attgaaagcagtgctgtatgctttctctaa
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integrated database retrieval system
