Equus caballus (horse): 100067285
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Entry
100067285 CDS
T01058
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
Organism
ecb
Equus caballus (horse)
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Gene cluster
GFIT
Motif
Pfam:
ADP_ribosyl_GH
Motif
Other DBs
NCBI-GeneID:
100067285
NCBI-ProteinID:
XP_005601411
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All DBs
Position
17:complement(80031306..80060487)
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AA seq
1600 aa
AA seq
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MEKFQAAMLLASVGDALGYRNACGETSVSGTRTQGELHKSGGLDHLVLSPEKWPVSDNSI
MHVATARALTTDYWCLDDLYREMVKCYVGVLEKLPEHRADPATMDGCSQLKPDNYLLAWH
TPFNEKGSGFGAATKAMCIGMRYWRPERLETLIEVSVECGRMTHNHPTGFLGSLCTALFA
SYAIQGKPLEQWGRDMMRTVPLAEEYCKKTIRHLAEYQEHWFYFEAKWQFYLEERKISED
VDSKATFPDHYDAEERDKTYRRWSSEGRGGRRGHDAPMIAYDALLGAGSSWTELCHRAMF
HGGESGATGTIAGCLFGLLHGLDSVPPGLYQDLEHKEELSRLGAALYRLSTEETPKNGKI
CSDKTPIDAQALKRKVSKATCHPAAHAILSSLLLYVTDHEDRPWGLPPANRAEGGGRKVS
CTPEPQDAHRRPTRFQLLQAKFMGPGREPRLKKTREVGRLIFKDKQGPSRSLVTATIGKL
LEKTREPIHSQKPRWGPPAGKSTVKNILKMFLAAEEKEAAEKPPAERPRAAGGPLPRTAG
KRNSVLSKLREKFEQSGCLYSEAGVLPLRTEDRKKKNLRRTKMHRPQARVLCMATLASTC
IRTPLARFLACTAEPVPAFSIATVVCGPRSWLSHCAKISRSDLGRVPRPATGTSPSVGET
APGGNKTPGKGRLGGECSGFPAPMTTAPRDHTGTVCPRAGPECVPEPAPSPASRRGEALP
GRKPTTSPLAAASPGYTQAAGGDSRGAPQAEGTADDTWGMRGAGVAPAVTLTVCSSEDET
ERSISDSERDPLFATQRNFPEENVPGRIPPLNMHAAQAAQRTQPAIEPPQIMVRLPVVHE
MPPPHATPPRAPGGEDQCPGALGGESAIGNTEAPFPTTESRSRGPATAGLREPPGTRQGY
WADPSPTPLQGAASADRHPPEAVPMPKPWASSPGGKGHEGGRGKLDRHEAREHVCTDAVS
ELTCEKQQLPESGATPPRDEGAPSRYTTASESRPGGTRCSASGWQQGPASSEEHRAGGPA
LLAASTKDRTRSESLTSTDKHILHEQERGRAPLPASAQPLLMAEESTTGGLGEHRPSSLN
GRPEPSIRAPGWLTAEGAKSHTAPAPGDALNPENSVAEERRALHGGERSLSTSHGLLAED
LAREPSRPLFLAPGGPWEPHSRAAQSSIRQDSGPRRPLASESPAEPQAALPLKAAGTQSV
HDDPLACVSNEWAARPAKAAGGSRDTMSAQASPAAADTKSPGPPSSHPLPQGRRTKGPPH
HTSGRGLAPSEPQQARKEDRAASGKQHPSSAGPTPQPSLAPSTAAEGQQVDRVPQECPNL
QARPQMASCTRAGVLEEVKVGERPQPQAGRGGREDGASGPAGLAGPGKEGAAPWGQNGTV
CWAEKAQTRPRDEREVEATATEVETPRLSAAKGLEHLFQQRGRREEEPARGHGAPTEESQ
APSPSEKLGRPALAQAGRMAPHDLARPTGGSAAVAPIAGDSGKSQGPAPRGAQGAPRAPL
KTGERRPGAAESQLCPRPEPTRGSAGSPPQPGGRQTPGAQAQEGPADTPGAGRGPWEPEH
RRRSARLAKYRAQSFCDQRSFDLSFRPAALRADAAAEPPQ
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtttcaggccgcgatgctgctggcgagtgtcggggatgccctcggttacaga
aatgcctgtggggagaccagcgtttcaggcacgaggacccagggggagctgcacaaaagc
ggggggctggaccacctggtgctctcaccagagaaatggccggtgagcgacaacagcatc
atgcacgtggcgacggcccgggcactgaccacagactactggtgcctggatgacctgtac
cgggagatggtgaagtgctacgtgggagtcctcgagaagcttccagagcaccgggccgac
ccagcaaccatggacggctgctcgcagctgaagccggacaactatctcctcgcctggcac
acgcccttcaacgagaagggttcaggattcggagctgccaccaaggcgatgtgcatcggc
atgcggtactggcggcctgagcggctggagaccctgatcgaggtcagcgtcgagtgcggc
aggatgacccacaaccaccccacaggcttcctcgggtccctgtgcacagccctgtttgca
tcttacgccatacaaggaaagccgctcgagcagtgggggagggacatgatgaggacagtc
cctctggcggaagaatattgcaagaagaccatccggcacctggcagagtaccaggagcac
tggttttactttgaagcaaaatggcagttttacttggaggagagaaaaatcagtgaagac
gtggacagtaaagccacctttcctgaccactatgacgccgaggagagggacaagacctac
aggaggtggagctcggaggggcgagggggacggcggggccacgacgcccccatgattgca
tatgacgctctcctgggagccgggagcagctggacggagctctgccaccgggccatgttt
cacggaggtgagagcggggccacggggaccatcgcgggctgcctgttcgggctgctgcac
ggcctggactccgtccccccggggctgtaccaggacctggagcacaaggaagagctgagc
cgcctgggcgcagccctctaccgcctgtccacggaggagacccccaagaatggcaagatc
tgcagtgacaagacgcccatcgacgcccaagccctgaaaaggaaggtcagcaaggcgacg
tgccacccggccgcccacgccatcctcagcagcctgctgctctatgtcaccgaccacgag
gacaggccctgggggctgcctcccgccaacagggcagagggcggggggagaaaggtgagc
tgcacgccagagccccaggacgcccaccggcggcccacgcgcttccagctcctgcaggcc
aagttcatgggccctggacgggagccccgtctcaagaagacccgggaggtagggaggctg
atcttcaaggacaagcagggccccagcaggagcttggtgacggccaccatcggcaagctc
cttgagaagacccgggagccgatccatagccagaagccccggtggggcccgcctgccggg
aagagcaccgtgaaaaacatcctgaagatgttcttggccgcagaggagaaggaggctgcg
gagaagccacccgcggagcggcccagagctgcgggaggccccctgccgaggacagcgggc
aagaggaactcagtcctgtccaagctgcgggagaagttcgagcagagcggctgtctgtac
tccgaggccggcgtgttgccgctccgcacggaggaccgaaagaagaagaacctgcggagg
acgaagatgcaccggcctcaggcccgcgtgctctgcatggccacccttgccagcacctgc
atcaggacgcccctcgcccgctttctggcctgcacggctgagcccgtgccagccttcagc
atcgccactgtcgtctgcggccccaggagctggctgtcccactgtgccaaaatcagccgc
tcagatctggggcgtgtgcccagaccagcaacgggcacgtcacccagtgtgggggagacg
gcacctggggggaacaagacaccaggaaaagggcggcttggcggggagtgctcagggttc
ccagcgcccatgaccacagctcccagggaccacacgggaacagtgtgccccagagcaggg
cccgagtgcgtccctgagccagccccctctcctgcctcccgcaggggcgaagctcttcct
ggccgcaagcccaccacatccccactggcagcagccagcccagggtacacccaggcagca
ggaggtgacagcaggggggccccccaggcagagggcactgcagacgacacctgggggatg
agaggggcaggggtggcccccgcagtcacactgactgtttgcagctcggaggatgaaaca
gaaagatccatttcagactcagagagagaccccctcttcgccacccagaggaattttcca
gaagagaatgtaccaggacgtatcccaccactcaacatgcacgcagcccaggccgctcag
cgcactcagccggccatcgagcctccacagataatggtcagacttcccgttgtccacgaa
atgccgccccctcatgccacgccgccaagggcaccaggtggtgaggaccagtgtcctggt
gctctgggaggagagagcgcgatcggaaacacagaagcgccatttcccaccacggagagt
agaagccgcggcccagccacagccggactgagggagcccccaggtacgcggcagggctac
tgggcagaccccagccccacgcccctacagggggctgccagcgctgatcgccaccccccc
gaggcagtgccaatgccgaaaccatgggcaagttcccctggagggaagggacacgaaggc
ggccgtgggaagctggaccggcatgaggctcgagagcacgtttgcacagacgctgtttcc
gagctcacctgtgagaagcagcagctgccagaatcaggggcaacgccaccccgcgatgaa
ggcgccccatcacggtacaccacagcgtcggagagccgcccaggagggacccgctgctct
gcctctggctggcagcaagggccggcttccagcgaggagcaccgggcgggcggccccgcc
ctgctggcggcctccaccaaggaccggacaaggtccgagagtttgacctcgacggacaag
cacatcctgcatgagcaagaacgcgggcgagccccactgcccgcgtctgcccagcccctg
ctgatggccgaggagagcactaccggcggcctcggcgagcacagaccgtcctccttaaat
ggacgcccggaaccaagcatcagagcccctgggtggttgacggctgaaggggccaagagt
cacacagcgccagcgcccggtgacgccctgaaccccgaaaacagtgtggccgaagagcgg
agggctctgcacgggggagagcgcagcttgtcaacaagccatggcctcctagcggaggac
ctcgctcgagaacccagccgccccctcttcctggcgcccggtgggccctgggagccccac
agcagagcggcacagagcagcatccgccaagactcagggccgcggcggcctctggcctcg
gagtccccggcagagccccaggccgctctcccactcaaggccgctggcacccaatctgtg
catgatgatcccctcgcgtgtgtttccaatgaatgggcagcgcgcccggcgaaggcggcg
ggaggaagcagggacaccatgtccgcgcaggccagccctgcggcggctgacaccaagtcc
ccggggccgccctcaagtcatcccctgccacagggacgccgcaccaaggggccgccccac
cacacctcgggcagggggctggcaccttctgagccccagcaggccaggaaagaggaccgc
gccgcatcgggaaagcagcacccttccagcgcggggcctacacctcagccgtccttggcg
ccctcgacggcagcagagggccagcaggtggacagggtgccccaggagtgtcccaacctc
caggcacgcccgcagatggcatcctgcacgcgggccggtgtcctggaggaggtcaaggtt
ggggagaggccacagccacaggcaggccgggggggccgggaggacggggcctcagggcct
gcaggactggccggtcctggaaaggagggagcagctccttggggccagaatggcacagtg
tgttgggctgaaaaggctcagactcgacccagggatgagcgggaagtggaggccacggcc
actgaggtggagacgccccggctgtcagctgcgaaaggcctggaacatctgttccagcag
cgggggaggcgtgaagaggagcccgctcgcggacacggtgcgcccactgaagagagccaa
gcaccttccccctcagagaagctggggcgcccggcactggcccaggccggcaggatggcg
ccccacgacctggcgcggcccacaggtggctcggcagcagtggcacccattgcaggcgat
agtggaaagtcccagggaccggctcccaggggcgcccagggggcgcccagagcgccgctc
aagaccggagaacggcggcctggggcggctgagagccagctgtgtccccgccctgagccc
acccggggctctgcagggtccccacctcagcctgggggccgccagacacctggtgcccag
gcccaggaggggcccgcagacacccccggggcggggagaggcccatgggagcccgagcat
cgccggaggtcagcacgcttggccaagtaccgagcccagagcttctgcgaccagaggtcc
ttcgacctgtccttcagacccgccgctctcagggccgacgccgcggctgagccgccacag
tga
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