Equus caballus (horse): 100068065
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Entry
100068065 CDS
T01058
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ecb
Equus caballus (horse)
Pathway
ecb01524
Platinum drug resistance
ecb03430
Mismatch repair
ecb05200
Pathways in cancer
ecb05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100068065 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100068065 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
100068065 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100068065 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecb03400
]
100068065 (MSH6)
DNA repair and recombination proteins [BR:
ecb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100068065 (MSH6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
HORMA
nSTAND_NTPase5
WPP
Motif
Other DBs
NCBI-GeneID:
100068065
NCBI-ProteinID:
XP_023474889
VGNC:
51368
LinkDB
All DBs
Position
15:complement(52335256..52355054)
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AA seq
1401 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNANKAPVRASGEGGAAAAATGASPSPGGDAAWSEAGPGPGPL
AGSAAPPAARNLNGGLRRSAAAAVPARSVGGGRGPKTEARRWGACSRGREARLGTGGPGA
RPRARRSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIREKGKSVRVHVQFFDDSPT
RGWVSKRLLKPYTGSKSKEAQKGGHFYSAKPEILRAMQRADEALNKDKIKRLELAVCDEP
SEPEEEEMEVGATYASDKSEEDNEIDSEEEVPPKVQGSRRSSRQIKKRRVISDSESDIGG
SDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVVPKRKRMVTGNGSLKKKTSRKEMP
SATKRATSISSETKSTLSAFSAPQNSESQAHVSGGCDDGSRPTIWYHETLEWLKEEKRRD
LHRRRRDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDA
LIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMA
HISKHDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKDDDSSGHSRVYGVCF
VDASLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSMETKMILKGSLSSSLQEG
LIPGSQFWDAAKTLRTLLEEGYFTEKLNEDSGVMLPQVLKDMTSESDSVGLTPGEKSELA
LSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSATRPGAVFTKANQRMVLDAVTL
NNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCSPYAINDRLDAIEDLMV
VPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLS
ALEGFKVICKIIGIMEEVVDDFKSKILKQVITLQTKNPEGRFPDLTIELNRWDTAFDHEK
ARRTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLE
IPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNF
DKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPLILLPEEDTPPFLYLKGSRHPCI
TKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCY
VPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGT
ATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPS
QETITFLYKFIKGACPKSYGFNAARLANIPEEVIQKGHRKAREFEKMTQSLRLFREVCLA
SERSSVDAEGVHKLLTLIQEL
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtacagcttcttccccaagtctccagcgctgaataatgcc
aacaaggccccggtcagggcctcaggggaaggtggcgccgccgccgctgccaccggggcc
tccccttcccccggcggggatgcggcctggagcgaggcggggcctgggcccgggcccttg
gcgggctccgcggcgccgcctgcggcgaggaacctcaacggagggctgcggaggtcggca
gcagctgcggtccccgccaggtcggtgggcgggggacgcgggccgaagacggaggcacgg
cggtggggcgcatgcagtcggggaagggaggctcgcctcggcactggagggcccggggcc
aggccccgggctcggaggagttcttgtgacttctcaccaggtgatttggtttgggccaag
atggagggttacccctggtggccttgcttggtttacaaccacccttttgatggaacattc
atccgtgagaaagggaagtccgtccgagttcatgtacagttttttgatgacagcccaaca
aggggctgggttagcaaaaggctattaaaaccatatacaggttcaaaatcaaaggaagcc
cagaaaggaggtcacttttacagtgcaaagcctgaaatactcagagcaatgcaacgtgca
gatgaagccttgaataaagacaagattaagaggcttgaattggcggtgtgtgatgagccc
tcagaaccagaggaggaggagatggaggtaggtgcaacttacgcatctgataagagtgaa
gaagataatgaaattgatagtgaagaggaagtaccacctaaagtgcaaggatctaggcga
agtagccgccaaataaagaaacgaagagtaatatcagactctgaaagcgacattggtggc
tccgatgtggaattcaagccagatgctaaggaggaaggaagcagtgatgaaataagcagt
ggagtaggggatagtgacagtgaaggcctggacagccctgtcaaagttgttccaaagcgg
aagagaatggttaccggaaatggctctctgaaaaagaaaacttcaaggaaggaaatgcct
tcagccaccaaacgagcaactagcatttcatcagaaaccaagagtactttgagtgctttc
tctgcccctcaaaattctgaatctcaagcccacgttagtggaggatgtgatgatggtagt
cgccccactatctggtatcatgaaacattagaatggcttaaggaggaaaagagaagagat
ctgcacaggaggcgacgtgatcatcctgactttgatgcatccacactctatgtgcctgag
gattttcttaattcttgtactcctgggatgaggaagtggtggcagattaagtctcagaac
tttgatcttgtcatattttataaggtggggaagttctatgagctgtaccatatggatgcc
cttattggagtcagtgaactaggtctggtattcatgaaaggcaactgggctcattctggt
ttccctgaaattgcatttggccgatattcagattccctggtccagaagggttataaagta
gcacgtgtggaacagaccgagaccccagaaatgatggaggcaagatgccgaaagatggca
catatatctaagcatgatagagtggtgagaagggagatttgtagagtcattaccaagggt
acacagacctacagtgtgctggaaggtgatccctctgagaactacagtaagtatcttctt
agcctcaaagaaaaagatgatgattcttctggccattctcgagtgtatggtgtatgcttt
gttgacgcctcactggggaagtttttcataggtcagttttcagatgatcgccattgttcc
aggtttaggactcttgtggcacactatcctccagtgcaagtcttgtttgagaagggaaat
ctctcaatggaaactaagatgattctgaagggttcattatcctcttctcttcaggaaggt
ctgataccaggctcccagttttgggatgcagccaaaactttgagaactctccttgaagaa
ggatattttacagaaaagttgaatgaggacagtggagtgatgttaccccaggtgcttaaa
gatatgacctcagagtctgattctgttgggttgacaccaggagaaaagagtgaattggcc
ctctctgctctaggtggttgtgtcttctacctcaaaaaatgccttattgatcaggagctt
ttatcaatggctaattttgaagagtatattcccttggattctgacatggtcagtgctaca
agacctggtgctgtctttactaaagccaatcagcgaatggtgctagatgctgtgacatta
aacaatttggagatttttctgaatggaacaaatggttctactgaagggacactgctggag
aagattgatacttgccatactccctttggtaagcggctcctaaagcagtggctttgtgcc
ccactctgtagcccttatgctatcaatgatcgtctagatgccatagaagacctcatggtt
gtgcctgataaaatctctgaggttgtagaccttctaaagaagcttccagaccttgagagg
ctactcagtaaaattcataatgttgggtctcccctgaagagccagaaccacccagatagc
agggctataatgtatgaagaaactacatacagcaaaaaaaagattattgattttctttct
gctctggaaggattcaaagtaatatgtaaaattatagggattatggaagaagttgttgat
gactttaagtctaaaattcttaagcaggtcataactctgcagacaaaaaatcctgaaggc
cgttttcctgatttgactatagaactgaatcgatgggacacagcctttgaccatgaaaag
gctcgaaggactggactgattactcccaaagcaggatttgactctgattatgaccaagct
cttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgcagt
agaattggctgtaggaccatagtctactgggggattgggaggaaccgttaccagttggaa
attccagagaatttcatcactcgtaatttgccagaagagtatgagttgaaatccacgaag
aagggctgtaaacgatactggactaaaactattgagaaaaagttggctaatctgataaac
gctgaagaacggagagacgtatcattgaaagactgcatgcggcgactattctataacttt
gataaaaattacaaggactggcaggctgctgtagagtgcatcgcagtgttagatgtctta
ttgtgcctcgctaactatagtcgagggggtgatggacctatgtgtcgtccactgattctg
ctgccagaagaagacactcctcccttcttataccttaaaggatcacgccatccctgcatt
acgaagactttttttggagatgactttattcctaatgacattctaataggctgtgaggaa
gaagaggaggaaaatggcaaagcttactgtgtgcttgttactggaccaaatatggggggc
aagtctacactcatgagacaggctggcctattagctgtaatggcccagatgggttgttat
gtacctgctgaagtgtgtaggctcacaccaattgatagagtctttactagacttggtgcc
tcagacagaataatgtcaggtgaaagtacattttttgttgaattgagtgaaactgctagt
atacttacacatgcaacagcacattctctggtgcttgtggatgaattaggaagaggtact
gcaacatttgatgggacagcaatagcaaatgcagttgttaaagaacttgctgagaatata
aagtgtcgtacactgttttctacccactaccattcattggttgaagattattctcaaaat
gttgcagtgcgcctaggacacatggcatgtatggtagaaaatgaatgtgaagatcccagc
caggagactattaccttcctctataaattcattaagggagcttgtcctaaaagttatggc
tttaatgcagcaaggcttgcgaatattccagaggaggttattcaaaaaggacatagaaaa
gcaagagaatttgagaagatgactcagtcactgcgattatttcgggaagtttgcctggct
agtgagaggtcatctgtagatgctgaaggtgtccataagttgctgactttgattcaggaa
ttgtag
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integrated database retrieval system
