Equus caballus (horse): 100068480
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Entry
100068480 CDS
T01058
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
ecb
Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecb04040
]
100068480 (SCN11A)
Ion channels [BR:
ecb04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100068480 (SCN11A)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
100068480
NCBI-ProteinID:
XP_001916634
Ensembl:
ENSECAG00000014297
VGNC:
22731
LinkDB
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Position
16:47977218..48055036
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AA seq
1781 aa
AA seq
DB search
MDNLCYPVIFPGARNFRPFTSDSLAAIEKRIAIQKEKKKSKDQTAAEPQPRPQLDLKVSR
KLPKLYGDIPKELIAKPLEDLDPFYKNHKTFMVLNKKRTIYRFSAKRALFIFGPFNSIRG
LAIRISVHSLFSMFIICTVIINCVFMATASEKDRSNKDADNAEYVFTGIYIFEALIKILA
RGFVLDEFSFLRDPWNWLDSIVIATAFVSYSPNKFSGISLSSLRTFRVFRALKAISVVSG
LKVIVGALLRSVRKLVNVMILTLFCLSIFALVGQQLFMGNLSQRCVKKSCKNSSNLDDSC
FEKKNPAEFRMCGSWKGSSACSEDFECRHTDDNPDHNFTKFDNFGWSFLAMFRLMTQDSW
EKLYQQTLVTSGLYSVFFFVVVIFLGSFYLINLTLAVVTMAYEEQNRNVAAETEAKEKMF
QEAQQLLKKEKEALVAMGIDRSSLNSLEASSFSPKKRKLFGNKKRKSFFLRDSGKEKFPG
TDSDEDSQKKPHLLEQTKRLSQNLSLDHGDERGDPIQRQRALSAVSILTITVQELEKSQE
PCLPCGENLASKYLVWDCSPQWLRIKKALKTMMTDPFTELAITICIIINTVFLAMEHYNM
DPTFETMLNTGNLVFTGVFMAEMFLKIIALDPYHYFRRGWNIFDSVVALLSFADVMNSIV
AGKQKWPFFRSLRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLAIVVFIFSVVGM
QLFGSKFGYEKRNTKSCIPTVPCLRRWHMGDFYHSFLVVFRILCGEWIENMWECMQVADP
SLCIIVFLLIMVIGKLVVLNLFIALLLNSFSSEERGGSLEGQTRKTEVQLALDRFRRAFY
FVLHNLEHFYHKWYRRQNLPEQKEVTGGSAAESKDIIPLVTEMKKGPDTWEEFGILISAP
KTLSVEYDRTWLAPLAEEEDDDVECPDENNAQPFTQPEAGKQASELHQETKKSSSPGVQS
VEIDVFSEDGASLLEQNSRKKSDATSVFSECSTIDPQDPFGQVPEMVPKKTPGRCLPKVL
SCCFPCCAMVKRKSSWITWWNLRKTCYQIVKHGWFESFIIFVILLSSGALVFEDIHLTNK
PNIQALLNYTDSVFTYIFILEMGLKWVAFGFGKYFSSAWCWLDFVIVIVSVASLLDLNVS
KSFRTLRALRPLRALSQFEGMKVVVNALMGAIPAILNVLLVCLIFWLIFCILGVNFFCGK
FGRCVNGTEISTINYSFITNITHCKSENFSWVTPRVNFDNVGMAYLALLQVATFKGWMEI
MYAAVDSTKEWEQPKFEHNKYMYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQRKISGQD
IFMTEEQRKYYNAMKKLGSKKPQKPIPRPLNKCQGLVFDLVTNQVFDIVIIILILLNMLT
MMAESHNQSDEKRLILEHLNLTFVVIFTIECLIKIFALRQYYFTNGWNLFDCVIVLLSLV
STMVSTLEKQEHIRFPPTLFRIVRLVRIGRVLRLVRAARGIRTLLFALMMSLPSLFNIGL
LLFLIMFIYAIFGMSCFGKVRLSGIDDIFNFETFVGSMLCLFQITTSAGWDALLSPMLQS
KDSCKTNSENCHLSTIAITYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGEDDF
EMFYEVWEKFDPEATQFIKYSALSDFADALPEPLRVAKPNKFQFLVMDLPMVSGDRLHCL
DILFAFTTRVLGDSNGLDSMKVMMEEKFMEANPFKKLYEPIVTTTKRKEEERCAAVIQKA
FRKYMLKITKCALEDRPPSPFQMLCNGDLSNSASKGKVHYD
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atggacaacttgtgctacccggtgatcttcccaggtgcacggaatttccgccccttcact
tctgactctctggctgcaattgagaagcggattgccatccaaaaggagaaaaagaagtcc
aaagaccagacagcggcagaaccccagcctcgacctcagcttgacctaaaggtctccagg
aagttgcccaagctctatggcgacattcccaaagagctgatagcaaagcccctggaagac
ttggacccattctacaaaaatcataagacattcatggtgttgaacaaaaagagaacaatc
taccgcttcagtgccaaacgtgccttgttcatttttgggcctttcaattcaatccgaggc
ttagccattagaatctcagtccattcattgttcagcatgttcatcatctgcaccgtcatc
atcaactgcgtgttcatggccacagctagtgagaaggacaggagtaataaagatgccgac
aatgccgagtatgtcttcactgggatttatatttttgaagctttgataaaaatattggca
agaggttttgttctggatgagttttctttccttcgagatccatggaactggctggactcc
attgtcattgcaacagcgtttgtgtcatattcgccaaataagttcagtgggatcagtctg
tcatccctgcgtacctttagagtgttcagagcattgaaggcaatttcagtagtttcgggt
ttgaaggtcattgttggggccttgctgcgctctgtgaggaagcttgtcaatgtgatgatc
ctgactctcttttgcctcagcattttcgccctggtaggtcagcagctcttcatgggaaat
ttgagccagagatgtgtcaagaagtcctgtaagaattccagtaaccttgacgactcttgc
tttgaaaagaaaaatcccgctgaattcagaatgtgcggctcctggaagggtagcagtgcc
tgttctgaagactttgaatgcagacacacagatgacaatcctgaccataattttacgaag
tttgacaactttggctggtcttttcttgccatgttccggcttatgacccaagattcgtgg
gagaagctttaccaacagactttggttacctcggggctctactcagtcttcttctttgtg
gtggtgatcttcctgggctctttctacctgattaacttaactctggctgttgtcaccatg
gcttacgaggaacagaacaggaacgtagctgctgagacagaggccaaggagaaaatgttc
caggaagcccagcagctgttaaagaaagagaaggaggctctggttgccatgggaattgac
agaagttcacttaattcccttgaagcatcatctttttccccaaagaagagaaagctattt
ggtaataagaaaaggaaatccttctttttgagagactctgggaaagagaagtttccagga
acagattctgatgaagattcccaaaaaaagccacacctcctagaacaaaccaaacgactg
tcccagaatctgtcactggaccatggtgatgagcgtggagaccccatccaaaggcagagg
gcgctgagtgctgtcagtatcctcaccatcactgtgcaggaactagaaaaatcccaggaa
ccttgcctcccatgtggggaaaacctggcatccaaatacctcgtgtgggactgcagcccc
cagtggcttcgtattaagaaggccctgaaaaccatgatgactgacccctttactgagctg
gccatcaccatctgcatcataatcaacaccgtcttcttggccatggagcattacaacatg
gacccgacttttgagacgatgttgaatacagggaatttggttttcactggcgtttttatg
gcagaaatgttccttaaaatcatcgcgctcgatccctaccactactttcgccgaggctgg
aacatttttgacagtgtcgtcgctcttctgagttttgcagatgtgatgaatagtatagtt
gcaggaaaacaaaaatggccatttttccgttccttaagagtgctgagggtcttcaagtta
gccaaatcctggccaactttgaacacactgattaagataattggccactccgttggagcc
cttggaaacctgactgtggtcctggccattgtggtctttattttctcggttgttggcatg
cagctttttggctctaaattcggttatgaaaaaagaaatacgaaatcctgtattcctaca
gtcccatgtttacgacgctggcacatgggggatttctaccactcctttctggtggtattc
cgcatcctctgtggggaatggattgaaaacatgtgggaatgcatgcaagtagctgatccg
tcactgtgcattattgtctttctgttgatcatggtgataggaaaactcgtggtactcaat
ctcttcattgccttgctgctcaattccttcagcagtgaggagagaggtggaagcttggaa
ggacagaccaggaaaaccgaagtccagttagccctggatcggttccgccgggctttttat
tttgtgttacataatcttgagcatttttatcacaagtggtacaggaggcaaaacttacca
gagcaaaaagaggtgacaggaggctctgctgcagagagcaaagacatcatccccctggtc
acagagatgaaaaagggcccagacacctgggaagagtttggtatactaatttctgcacca
aagaccttgagtgttgagtatgatcggacttggttggccccacttgctgaagaggaagat
gatgatgttgaatgtcctgatgaaaataatgcacaacctttcacacaacctgaggctgga
aaacaggcctctgaactccaccaggagaccaagaagtccagcagcccaggagttcaaagt
gtggaaattgacgtgttctctgaagatggtgcttctctgttagaacaaaattcccgaaag
aagtctgatgctaccagtgtgttctcagaatgtagcaccattgatccacaggatcccttt
gggcaggtacctgaaatggttcccaaaaaaaccccagggagatgtttgcccaaagtccta
agttgctgcttcccatgctgtgctatggtcaagagaaagtcttcctggatcacttggtgg
aacctgcggaaaacctgctaccaaatagtgaaacacggctggtttgagagttttattatc
tttgtgattctgctgagcagcggggcactggtatttgaagatattcaccttactaacaaa
cccaatattcaagcattacttaattatactgacagtgttttcacatacatttttatcctc
gagatgggtctgaaatgggtggcctttggatttgggaagtatttctccagtgcctggtgc
tggctcgatttcgtcattgtgattgtctctgtggccagtctccttgacttaaatgtctca
aagtccttccggactctccgagcactgaggcccctgcgagcgctgtcccagtttgaagga
atgaaggtggtagttaatgctctcatgggtgccatacctgccattctgaatgttttgctt
gtctgcctcattttctggctcatattttgtatcctgggagtaaacttcttttgtggaaaa
tttggaagatgcgttaatggaacagaaatatcaactataaattacagcttcattacaaac
ataacccactgtaaaagtgaaaatttctcctgggtcaccccaagagtcaactttgacaat
gtgggaatggcttacctcgccctgctgcaagtggcaacatttaagggctggatggaaatt
atgtatgcagctgttgattccacaaaggaatgggaacagccaaagtttgagcacaacaaa
tacatgtacctttacttcgtagtttttatcatctttggttcattcttcactctgaatctc
tttattggtgttattattgacaacttcaaccaacagcaaagaaagataagtggccaagac
atttttatgacagaagaacagaggaaatactataatgcaatgaaaaaattaggatccaaa
aaacctcagaagcccattccaaggccactgaacaaatgccagggacttgtgtttgacctg
gtcacaaaccaggtctttgacatcgtcatcatcatcctcattctcctcaacatgcttacc
atgatggctgaatcacataaccagtcagacgagaaaagactcatcctcgagcatctcaac
ctgacctttgtggtcatctttacaattgagtgtctcatcaaaatctttgctctgaggcaa
tactacttcaccaatggctggaatttatttgattgtgtgattgtgctcctttctcttgtt
agtacaatggtttccaccttagaaaaacaggagcacattcgttttcctccaacactcttc
agaattgtccgcttggttcggattggccgagtcctgagacttgttcgggcagcacgagga
attaggactctcctttttgctctgatgatgtcccttccctctctattcaacatcggtctt
ctactctttttgattatgtttatttatgccatttttggtatgagctgttttggcaaagtg
aggctgtctggaattgatgacatcttcaacttcgaaacttttgtaggcagcatgctgtgt
ctcttccagataaccacgtcagcaggctgggatgccctcctcagccccatgctgcaatca
aaagattcatgtaaaaccaactcagagaactgtcacctctctaccatagccataacctac
ttcgtcagttacattatcatctcctttctcattgttgtcaacatgtatattgctgtgatt
ttagagaacttcaatacagccactgaagaaagtgaggaccctttgggtgaagatgatttt
gaaatgttctatgaagtctgggaaaagtttgacccagaagcaacacagtttatcaaatat
tctgccctttctgactttgcggatgcccttccggagcctttgcgtgtggcaaagccaaat
aaatttcaatttctagtaatggatttgcccatggtgagtggagatcgcctccactgcctg
gatattctctttgctttcaccactagggtacttggtgattccaatggcctggacagcatg
aaagtaatgatggaggagaagttcatggaagcaaaccctttcaagaagttatatgaaccc
atagtcaccaccaccaagaggaaggaagaggaaagatgtgctgctgttattcaaaaggcc
tttcgaaagtacatgctgaagataaccaagtgtgctttggaagacaggcccccttcacca
ttccaaatgctctgcaatggggacttgtccaactctgcctccaagggcaaggtacactac
gactga
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integrated database retrieval system
