Equus caballus (horse): 100069097
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Entry
100069097 CDS
T01058
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
ecb
Equus caballus (horse)
Pathway
ecb03440
Homologous recombination
ecb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100069097 (PALB2)
03460 Fanconi anemia pathway
100069097 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecb03400
]
100069097 (PALB2)
DNA repair and recombination proteins [BR:
ecb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
100069097 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
100069097 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
100069097
NCBI-ProteinID:
XP_005598900
Ensembl:
ENSECAG00000008391
VGNC:
21140
LinkDB
All DBs
Position
13:24913130..24935701
Genome browser
AA seq
1185 aa
AA seq
DB search
MEEPLGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKVKNSLKKTVEGQDDLLQ
EEVSPQLNRPEPKNKASPCDTLQINSHLNEDTGGKTSVTLDAEPGHGPVEGLCIQRTGDI
QERFPYRVPGPDGEKRQSKLPGRRTKQQKRTFISQERESFFDTDSLLLSGKRLKEQEGIN
RENPRTLVTEKRIYLPSPKSDGSDLPAAVIETNVGSVLIPNAKPQRGVDELFRGNDFPRA
TTLPVHTLLDSSSGQHLEHKPSEDNGELIAHSLENISPVSPVNLEAQDKKMTVLTDNPEV
NKAVSASGQLPRSPNLEADNSCSLNELTSDSLSADENQNFKEQNHAERSLKSPNNTLDGR
NESIQENEVLSQPNSLSLEVISPDSAEDQTDSCTVLEGLLFPAEYYVRTTRRMSSCQRKV
ALEAVIQSHLGVRKKGFKNKKEATKNLNSSSEETKQSEIRMSDTCTGRPNSRSPAQKLLS
LTEVSSPTGPTPDDFSRKAVTQTSGRRPGGKRKSTCTPELDRCELLLPTSGTCGVNRSKE
GVTLRKDENEKATIRGKESHCQMKKNEKMKKEESLSSRNSAYLALDDDAFRAPFHKNEML
SLKQLSSLLEITDFELPDKDFGPLKLEKLQFCSERAVEPFESKIYGERPLREGNCIVLEE
LTPEQIDTEMEDLEEELISVPGKACPKTPSLKSQPQGLSSSILLFTPLNTVRPDDNDAPA
ADACSPTFPILGVTPAVGSRARCEEVCAEFVGRTCSPPRLSHSHTPVSLANDHKQCNSWA
SPPELDGSLHVSGRKGKPSCDCDSGPQATPLPNESFTFQENQLHGNTCLESWKLSVEQTE
IADVPACDRVNPGNLQLVSKLKNTSGSCSVDVSAMWWEIAGLKEPCIITACEYVVSLWKA
LDTWQWEKIYSWHFTEVPVLQIVLVPDVCNLVCVALGNLEIREIRALLCSSDGESEKQLL
LSSGNIKAVLGLTQRRLVTSSGTLCDQQVEIMTFAEDGGSKEKQFLMPPEETILTFAEVQ
GMQEALLGTTIMNNIVIWNLRTGQLLRKMHIGDSYQASVCHKAYSEMGLLFVVLSHPCAK
ESEALRSPVFQLIVINPKTTLSMGVMLYCLPQGQAGRFLEGDVKDTFAAAVLTSGTIAIW
DLLLGHCTALLPPLSDQNWSFVKWSGTDSHLLAGQKDGNIFIYRY
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctctcgggaagcccctcagctgtgaggagaaggaaaagttgaaggaaaaa
ttagctttcttgaaaagggaatacagcaagaccttggcccgccttcagcgtgcccaaaga
gctgagaaggttaagaattctcttaagaaaacagtggaaggacaagatgacttgctccag
gaagaagtttcaccacagctaaaccgcccagaacctaaaaataaagcatctccttgtgac
acgttacaaatcaactcccatctcaatgaagacactggaggaaagacatctgtcacgctt
gatgcggagccaggacatggcccagtggaaggattatgcatacaaagaacaggtgatatc
caagaacgttttccctacagggtccctggccctgatggtgagaaaaggcagagtaagctg
ccagggagaagaactaagcagcagaagagaacatttatttcacaggaaagagagtctttc
tttgacactgattcccttctactctctggcaaaagactaaaggaacaggaaggaatcaat
agagaaaatcctaggacacttgtaactgaaaaaagaatttaccttccaagtcctaagtct
gacggttcagatcttccagcagcagttatagaaactaatgtagggagtgtattaattcca
aatgccaaaccacaaagaggtgtcgatgagctcttcagaggaaatgacttccccagagcg
actacactgcctgtgcatactctgctagatagcagtagtggtcagcatctcgagcataag
ccttctgaagataacggtgaacttattgctcacagtttagaaaacattagccctgtttca
cctgtaaacttagaagcacaagacaaaaaaatgactgtccttacagataacccagaggta
aataaagctgtaagtgcaagcggccagctgcctagaagtcctaacttagaggcagataat
tcatgttctctaaatgaactcacttctgatagcttatcagcagatgaaaaccaaaacttc
aaagaacaaaatcacgcagagaggtctttaaaatctcccaataacactcttgatggtaga
aatgaaagtattcaggaaaatgaggttctaagtcaacctaacagtctcagcctagaagta
atctcccctgattctgcagaagatcaaacagattcttgcacagtgcttgaaggcctccta
tttcctgcagaatattatgttagaaccacgcgacgcatgtccagctgccagaggaaagta
gccctggaggctgtaattcagagtcatttgggtgtcagaaagaaggggtttaaaaataaa
aaggaagctactaaaaatttaaactcctccagtgaagagactaagcaaagtgaaattagg
atgtctgacacatgcacaggacgacccaactcgagaagtcctgctcagaaacttctctca
ttaaccgaagtcagctcccccactgggcccactccagatgacttttctaggaaggcggtt
acccagacatctggcagaagacccggaggaaaaagaaagtcaacctgcacccctgaatta
gatcgttgtgaactacttttgccaacttctggcacgtgtggtgtcaataggtccaaggaa
ggagtcacgttgcgcaaagatgagaatgaaaaagcaactattcgtggaaaagaaagtcat
tgtcaaatgaaaaaaaatgaaaaaatgaaaaaagaggagtccctttcttccagaaatagt
gcttatttggctttggatgatgatgctttccgtgctccatttcataagaatgaaatgcta
agtttaaagcaactatcgtctcttctcgaaatcactgactttgagttacctgataaagac
ttcggacctcttaaacttgaaaaattgcagttctgctcggaaagggcagttgagcctttt
gaatcaaaaatatatggggagaggcctcttagagaaggaaattgtattgttttggaggaa
ttgactcctgaacaaatcgatacagaaatggaggacttggaagaggaactgattagtgta
ccaggaaaagcatgccctaaaacgccgagcctaaaaagccagcctcagggcctttcttcg
tccatactgcttttcactcctttaaatacagttagaccagacgataatgacgcgccagca
gcagacgcatgttcacccactttccccatcttaggcgttactccagctgttggctcccga
gcacgctgtgaagaagtgtgtgcagagtttgttggacgaacttgctctccaccccggctt
tctcactcgcacaccccagtcagtcttgccaatgatcataagcagtgcaacagttgggcc
agcccaccagaattagacggcagcctgcatgtgtcaggaaggaagggaaagccctcctgt
gactgtgattctggtccccaagcaacacctcttcccaatgagtcattcactttccaagaa
aatcagctgcatgggaatacatgtctggaatcgtggaaactttccgttgaacagacagaa
atagcagatgttcctgcgtgtgacagggtaaacccaggcaacctacaattggtttcaaag
ttaaagaatacttcaggttcctgttctgtggatgtgagtgccatgtggtgggaaatagct
ggtttgaaagagccgtgtatcataactgcgtgtgaatatgtagtttctctttggaaagct
ctggatacttggcagtgggaaaaaatttattcctggcacttcacagaggttccagtatta
cagatagttctagtgcctgatgtttgtaatcttgtgtgtgtggctttgggaaatttggaa
atcagagaaatcagggcattactttgttcctctgatggtgaaagtgaaaagcaattactc
ctgagttctggaaatataaaagctgtgcttggcctgacacagagaaggctagtcactagc
agtgggaccctttgtgatcaacaagtagaaatcatgacctttgcagaagatggaggaagc
aaagaaaaacagtttttgatgccccctgaagagactatactaacttttgctgaggttcaa
gggatgcaggaggctctgcttggtaccactataatgaacaacattgttatctggaattta
agaaccggtcagctcctgagaaagatgcacattggcgattcctaccaagcttcagtctgt
cacaaagcctattctgaaatggggctcctctttgttgttctgagtcatccttgtgccaaa
gagagtgaggcgctgagaagccctgtgtttcagctgattgtgattaacccgaagacgacc
ctgagtatgggtgtgatgctctattgtcttcctcaagggcaggctggaaggttcctggaa
ggtgatgtgaaagatacttttgcagcagcagtgttgacttctggaacaatcgccatttgg
gacttacttctaggtcattgcactgctctccttccacctctctctgaccaaaattggtct
tttgtgaaatggtcaggtacagattctcatttgctggctggacaaaaagatggaaatata
tttatataccgctactaa
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integrated database retrieval system
