Equus caballus (horse): 100069294
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Entry
100069294 CDS
T01058
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ecb
Equus caballus (horse)
Pathway
ecb03013
Nucleocytoplasmic transport
ecb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100069294 (UPF3A)
03015 mRNA surveillance pathway
100069294 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100069294 (UPF3A)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100069294 (UPF3A)
mRNA cycle factors
P-body specific factors
100069294 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
100069294
NCBI-ProteinID:
XP_023477680
Ensembl:
ENSECAG00000017141
VGNC:
24806
UniProt:
F6WXU6
LinkDB
All DBs
Position
17:80656556..80675637
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AA seq
469 aa
AA seq
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MRSEKEAARGLGAALAARGPSGREKPSAMEVQFRRESPPTTSSGCGGGADKPREEKRTVL
SKVVIRRLPPSLTKEQLEEQLHPLPAHDYFEFFTADLSLFPHLYSRAYINFRNPEDILLF
RDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDAEYKKFLEAYCVE
EEKAAASPETLLGDIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKK
RLREEEKRKRREEERCKRKEADKQERAAEREVRIKLLKKPEKGDESTTEKPKERGEEVDV
GDARREPCPSCAVVRPRPPESLWEEPRDKSQNDSDKEQRDVERRFREKELETQRYHLDES
RKHRAHYEFEPKWGKGFTPDRGKKGSQDDGVPMEATERPAGEQRSAGGPMPRKERMGNKD
RPSLQLYQPGARSRARECGGRPSEEGRAGRRGEAEDSAGAGAKRSEEAE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggagaaggaggcggccagaggcctcggggcggctcttgctgcgcggggcccg
agcgggcgggagaagccgtcggccatggaagtccagttccgccgggagtcaccgcctacc
acgtcctccggctgtgggggtggcgcagacaaacctcgcgaggagaagaggacggtcctg
agcaaggtggtcatccgccggcttcctcccagcctcacgaaggagcagctggaagaacag
ctgcacccactgcctgcgcacgactactttgagttctttactgccgatctcagtcttttt
cctcatctctactcaagagcatacattaattttagaaatcctgaggacatccttcttttt
agagatcgttttgatggatatatcttcattgacagtaaaggcctagaatatcctgcagtg
gtagagtttgctccattccagaagatcgccaaaaagaagctaaagaagaaagatgccaaa
accggaagcattgaagacgatgcagaatacaagaagttcttagaagcttactgtgtggag
gaggagaaagccgctgccagtcctgagactcttctgggggacatagaggcaaagacaaga
gaacttattgccagaagaaccacgcctcttttggaatatattaagaacaggaagttagag
aagcagagaattcgagaggagaagcgggaagaacgaaggaggagggagctggaaaagaaa
cgcctgcgggaagaagaaaagagaaaaagaagagaggaggaaagatgtaagagaaaagag
gctgacaagcaagagcgagcggcggagagagaagtgaggattaagctgcttaagaaacca
gaaaagggagacgaatcaaccactgagaaaccaaaagaaagaggagaagaagtcgatgtt
ggagatgcaagacgggagccctgtcccagctgtgccgtcgtgaggcccaggcccccagag
agcttgtgggaggagcccagggacaagtcacaaaatgacagtgataaagagcagagggat
gtggagagaagatttcgagaaaaagaacttgaaacacaaagataccacttggatgagagc
agaaagcacagagctcactatgagtttgagccgaaatgggggaaaggattcaccccagac
agagggaagaaagggagccaggatgacggggtccctatggaggccacagagagaccagcg
ggggagcagaggagcgcgggcggccccatgcccaggaaggagcgcatgggaaacaaggac
cggccatccttgcagctctaccagccaggcgctcgcagccgagcacgtgaatgtggcgga
agaccctctgaggagggccgtgccgggaggaggggcgaggccgaggattccgcaggggct
ggtgccaagaggagcgaagaggcagagtga
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