Equus caballus (horse): 100069324
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Entry
100069324 CDS
T01058
Symbol
TNRC6A
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X4
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ecb
Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100069324 (TNRC6A)
03036 Chromosome and associated proteins [BR:
ecb03036
]
100069324 (TNRC6A)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100069324 (TNRC6A)
Chromosome and associated proteins [BR:
ecb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100069324 (TNRC6A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
M_domain
RRM_1
CreD
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100069324
NCBI-ProteinID:
XP_005598897
Ensembl:
ENSECAG00000025056
VGNC:
24398
LinkDB
All DBs
Position
13:complement(24008703..24192963)
Genome browser
AA seq
1917 aa
AA seq
DB search
MVSMSCHPGQGMPVVSMFLLVPEQIKPSVSQPQPANSNNGTSTATSTNNNAKRATANNQQ
QQQQQQQQQQQPQQQQQQQPPQALPRYPREVPPRFRHQEHKQLLKRGQHFPVIAANLGSA
VKVLSSQSESSALTNQQPQNNGEVQNSKNQSDINHNTSASHYENSQQGPVSSTSDSSTNC
KNAVVNDSPEKEAWPSVPGSDPELASECMDADSVSSSESERNITIMASGSTGGEKDGLRN
STGLGSQNKFVVGSSSNNVGHGSSTGPWGFSHGAIISTCQVSVDAPESKSESSNNRMNAW
GTVSSSSNGGLNPSTLNSASNHGAWPVLENNGLALKGPVGSGSSGINIQCSTIGQMPNNQ
SINSKVGSSSTHGTWGSLQETCESEVSGTQKVSFSGQPQNITTEMTGPNNTTNFMTSSLP
NSGSVQNNELPSNTGAWRVSTMNHPQIQAPSVINGTSLSHLSNGESKSGGSYGTTWGAYG
SNFSGDKCASPNGQANGDTVNATLMQPGVNGPMGTNFQVNTNKGGGVWESGAANSQSASW
GSGNGANSGGSRRGWGAPAQNTGTNIPSVEWNKLPSNQHSNDSANGNGKKFTNGWKSTEE
EDQGSATSQTNEQNSVWAKTGGTVESEGSTESTGRLEEKVTGENQSRDRRKIDQHTLLQS
IVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGAC
IDKTSPNSTDTSSVSGWGDPKPTLRWGDSKGSNCQGGWEDDSAATGMVKSNQWGNCKEEK
SAWNDSQKNKQGWGDGQKSNQGWSVSASDNWGETSRSNHWGEANKKSSSGGSDSDRSVSG
WNELGKTSSFTWGNNINPNNSSGWDESSKPNPSQGWGDAPKSNQSLGWGDSSKPVSSPDW
NKQQDIVGSWGIPPATGKPPGTGWLGGPIPAPAKEEEPTGWEEPSPESIRRKMEIDDGTS
AWGDPSKYNYKNVNMWNKNVPNGSSRSDQQAQVLQLLPSASAVSNKEASSGTGWGEPWGE
PSTPATTVDNGTSAWGKPIDSGPSWGEPIAAASSTSTWGSSSVGPQALSKSGPKSMQDGW
CGDDMPLPGNRPTGWEEEEDVEIGMWNSNSSQELNSSLNWPPYTKKMSSKGLSGKKRRRE
RGMMKGGNKQEEAWINPFVKQFSNISFSRDSPEENVQSNKMDLSGGILQDKRMEIDKHSL
NIGDYNRTVGKGPGSRPQISKESSMERSPYFDKDGIVADESQNMQFMSSQSMKLPPSNSA
LPNQALGSIAGLGMQNLNSVRQNGNPSMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQV
PPPLLSPQVPVSLLKYAPNNGGLNPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQRA
AQSQRSVPSGNRQQQDQQGRPLSVQQQMMQQSRQLDPNLLVKQQTPPSQQQSLHQPAMKS
FLENVMPHTTPELQKGPSPINAFSNFPIGLNSNLNVNMDMNSIKEPQSRLRKWTTVDSIS
ANTSLDQNSSKHGAISSGFRLEEPPFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSSS
VNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVDHLRDRNSGSSSSLNT
TLPSTSAWSSIRASNYNVPLSSTAQSTSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPK
NITAPSRPPPGLTGQKPPLSTWDNSPLRVGGGWGNSDTRYTPGSSWGESSSGRITNWLVL
KNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTT
ILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGALDCSHPFSSRTDLNHWNGAGL
SGTNCGDLHGTSLWGTPHYSASLWGPPSSSDPRGISSPSPINAFLSVDHLGGGGESM
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atggtgagcatgagctgtcatccaggccagggaatgccagtggtctccatgttcttatta
gtgccagaacagataaagcccagtgtaagccagcctcagcctgccaactctaataacggc
acttccacagcaaccagcactaataataatgccaagcgagccacagccaacaatcagcag
cagcagcagcagcaacagcaacaacagcagcagccacagcagcagcagcagcaacagcca
ccacaggccttgcctcggtatcctcgtgaagtaccaccacgatttcgccaccaggaacat
aaacagcttctaaagaggggtcagcattttcctgtcatagcagcaaacctgggatctgct
gttaaagtattaagcagccagtcagaaagcagtgctttaacaaatcaacagccacaaaat
aacggagaggtgcagaacagcaaaaaccagtcagatataaaccacaatacttcagcatcc
cattatgaaaattcgcagcagggacctgtgtcttctacaagtgactctagcacaaactgt
aagaatgctgttgtgaacgactcccctgaaaaagaagcatggccttcagtccctggcagt
gatccagagttggcttcagaatgtatggatgctgattctgtctccagttctgaatcagag
agaaacatcactatcatggcttcagggagcacaggtggtgaaaaagatggccttcggaat
agcactggacttggttcccaaaacaaatttgtggttggtagcagcagcaataatgtgggc
catggaagtagtactgggccatggggtttttcccatggagccataataagcacatgtcag
gtctctgtggatgctcctgaaagcaaatcagaaagtagcaacaatagaatgaatgcttgg
ggcactgtaagttcttcatcaaatggagggttaaatccaagcactttgaattcagctagc
aaccatggtgcctggccagtattagagaacaacggacttgccctcaaagggcctgtaggg
agtggtagttctggcatcaatattcagtgcagtaccataggccagatgcctaacaatcag
agtattaactctaaagtgggtagttcttctacccatggtacctggggaagccttcaggaa
acttgtgaatctgaagtaagtggtacacagaaggtttcattcagtggtcaacctcaaaat
attaccactgaaatgactggaccaaataacactactaactttatgacctctagtttacca
aactccggttcagtacagaataatgaactgcctagtaatacaggggcctggcgtgtgagc
acaatgaatcatcctcagatacaggctccatcagttataaatggcacttccctttctcac
cttagcaatggagagtcaaaaagtggaggctcttacggtactacatggggtgcctatggt
tctaatttctctggagacaaatgtgcaagccctaatggccaagctaatggtgacactgtg
aatgcaactctaatgcagcctggcgtaaatgggcctatgggcactaactttcaagttaac
acaaataaaggaggaggtgtgtgggagtctggggcagcaaattctcagagtgcatcatgg
ggaagtggaaatggtgccaattctggaggaagccgaagaggatggggagctcctgcacaa
aacactggcactaatatacctagcgtggagtggaacaaactgcctagcaatcagcattcc
aatgacagtgcaaatggcaatggtaagaagtttacaaatggatggaaatctactgaggaa
gaggatcagggttctgccacatctcagacaaatgagcaaaacagcgtgtgggccaaaaca
ggaggtacagtggagagtgaaggtagtacggaaagcactggacgcctcgaggaaaaagta
actggggaaaatcagagtagggatagaagaaaaattgatcagcacacattactccaaagc
attgttaacagaactgacttagatccacgtgtcctatccaactctggttggggacagact
cctattaagcagaatactgcctgggatactgaaacatcacctagaggggaaagaaagact
gataatgggacagaggcctggggaagctctgcaacacagacttttaactcaggggcgtgt
atagataagactagccctaatagtactgatacctcatctgtgtcggggtggggagatccc
aaacctactctgaggtggggagattccaaaggctcaaactgccaggggggatgggaagat
gattctgctgctacaggaatggtcaagagcaatcagtgggggaattgcaaagaagagaag
tctgcatggaatgattcgcaaaagaacaaacagggatggggtgatggacaaaaatcaaac
caagggtggtccgtttctgccagtgataactggggagaaacttcaaggagtaaccattgg
ggtgaagctaataagaaatctagctcaggaggtagtgacagtgacaggtccgtttctggt
tggaacgaacttggtaaaactagttctttcacttggggaaataacataaatccaaataat
tcatcaggatgggatgaatcttctaaacctaatccttcccagggatggggagatgctcca
aagtctaatcagtctctaggttggggagattcgtcaaagccagtcagttctccagactgg
aataagcaacaggacattgtcggatcttggggaatcccaccagctacaggcaaacctcct
ggtacaggctggcttggaggacctataccagccccagcaaaagaagaagaacccacaggc
tgggaggagccatccccagaatccatacgtcgcaaaatggagattgatgatggaacttca
gcttggggagatccaagcaaatacaactacaaaaatgtgaacatgtggaacaaaaatgtc
ccaaatggcagcagccgttcagaccagcaagcacaggtacttcagttgctgccatctgca
agtgccgtctcaaacaaagaggcaagcagtggcactggctggggtgagccctggggggag
ccttctactccagccacaactgtggataatggtacttcagcatggggtaaacccatagac
agtggtcccagctggggggaacccattgctgcagcatccagcacatccacatggggctcc
agctctgttggtccacaagcattaagcaaatctgggccaaaatctatgcaagatggctgg
tgtggtgatgatatgccattgcctggaaatcgccccactggctgggaagaggaagaggat
gtagaaattggaatgtggaatagtaattcatctcaagagcttaactcatctttaaattgg
ccaccatatacaaagaaaatgtcatcgaagggtctgagtggcaaaaaaaggaggagggaa
aggggaatgatgaaaggtggaaacaaacaagaagaagcatggataaatccgtttgttaaa
cagttttcaaatatcagtttttcgagagactcaccagaagaaaatgtacagagcaataag
atggacctttctggaggaatattgcaagacaaacgaatggagatagataaacatagccta
aatattggtgattacaatcgaacagtcgggaaaggtcctggttctcggcctcagatttcc
aaagagtcttccatggagcgcagtccttattttgataaggatggcattgtagcagatgaa
tcccaaaacatgcagtttatgtccagtcaaagcatgaagcttcccccttcaaatagtgca
ctacctaaccaggcccttggctccatagcagggctgggtatgcaaaacttgaattctgtt
agacagaatggcaatcccagtatgtttggtgttggaaacacagcagcacaaccccggggc
atgcagcagcctccagcacaacctcttagttcatctcagcctaatctccgtgctcaagtg
cctcctccattactctcccctcaggttccagtttcattgctgaagtatgcaccaaacaac
ggtggcctgaatccgctctttggccctcaacaggtagccatgctgaaccagctatcccaa
ctaaaccagctttctcagatctcccagttacagcgattgttagcgcagcagcaaagggcg
gcgcagagtcagagaagcgtgccttctgggaaccggcagcagcaagaccagcagggtcga
cctcttagtgtgcagcagcaaatgatgcaacaatcccgtcaacttgatccaaacctgttg
gtgaagcaacagactccgccatctcagcagcagtcactccatcagccagccatgaagtct
ttcctcgaaaacgtcatgccccacactacacccgagctgcaaaaagggccatcaccaata
aatgctttcagcaacttccctataggcttgaactcaaacttgaatgtaaatatggatatg
aacagtattaaagagccacagtcaagactaaggaagtggactacagtggacagcatttct
gcaaacacatctttggatcaaaactccagcaaacatggtgctatttcaagtggtttcagg
ctggaagagcccccgtttgttccctatgacttcatgaatagcagtacttctccagccagc
cctccgggttcaataggagacggctggccacgtgccaaatcgcctaacggctctagcagt
gttaattggccaccagaatttcgccctggtgaaccatggaaaggttatccaaacattgac
cctgaaactgacccttacgtcactcctggcagtgtcataaacaatctttcaattaatact
gtacgggaagttgaccacctcagggacaggaacagtgggtcatcctcatccttgaacacc
acgctgccttcaactagtgcctggtcatccattcgtgcctccaactacaacgttcccctc
agcagtacagcacaaagcacttcagccagaaatagtgattccaaattgacatggtctcct
ggttcagttacaaacacctctctggctcatgagctgtggaaggtccctttgccacctaaa
aacatcactgctccgtcccgcccacctccgggactgactggtcagaagccacccttgtct
acgtgggataattctccccttcgtgtaggtggaggatggggaaattctgacaccaggtat
accccaggttccagctggggtgagagcagctcagggagaataacaaattggcttgttcta
aaaaaccttacacctcagattgatggctcaactctgcgtactctgtgcatgcagcatggc
ccactgataacattccacctgaacctcccacatggaaatgctttggtccgttacagttca
aaagaagaggtagtgaaggcacaaaagtctctgcacatgtgtgtattggggaacactact
attcttgctgagtttgccagtgaagaggagatcagtcgtttctttgcacaaagtcagtct
ctgaccccttctcctggctggcagtctctcgggtccagccagagccggctgggcgctctc
gactgttcccacccgttctccagccggaccgatctcaatcactggaatggtgctgggctg
tcgggaactaactgtggagaccttcacggcacttcactctgggggaccccacattattcc
gcaagcctgtggggccccccaagcagcagcgacccccggggaatcagcagcccatccccc
attaatgcttttctttctgttgaccacctgggtgggggtggagagtccatgtaa
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integrated database retrieval system
