Equus caballus (horse): 100069342
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Entry
100069342 CDS
T01058
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X2
KO
K14327
regulator of nonsense transcripts 2
Organism
ecb
Equus caballus (horse)
Pathway
ecb03013
Nucleocytoplasmic transport
ecb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100069342 (UPF2)
03015 mRNA surveillance pathway
100069342 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100069342 (UPF2)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100069342 (UPF2)
mRNA cycle factors
P-body specific factors
100069342 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100069342
NCBI-ProteinID:
XP_001916636
Ensembl:
ENSECAG00000017022
VGNC:
24805
LinkDB
All DBs
Position
29:23618921..23731160
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AA seq
1268 aa
AA seq
DB search
MPAERKKPASMEEKESLLNNKEKDCGERRPVSSREKPKDEIKLTAKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEKKKHEEEERKKQEEQAKRQQEEEAAQLK
EKEESLQLHQEAWERHQLRKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKTIT
EQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLLQ
VWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRESH
THVSVVISFCRHCGDDIAGLAPRKVKSAAEKFNLGFPPSEIISPEKQQPFQNLLKEYFTS
LTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLDE
NMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAIL
FKDNEKSCQNKESNKDDSKEAKEPKDSKEVSSPDDLELELENLEISDDTLELEGGDEAED
LTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRK
KLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIET
KNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHL
RTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKD
LSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVN
PDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVW
TKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSKDS
MTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTDS
NKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAI
PLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQ
QAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNAD
LIFKTGGR
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttactaaacaac
aaggaaaaagactgcggtgaaaggcggccagtgagcagcagggagaaaccaaaagacgag
atcaagcttactgccaagaaggaggttattaaggtccctgaagataaaaagaagaaactg
gaagaagataagagaaaaaaagaagacaaggaacgcaagaaaaaagaagaagaaaaggtg
aaggcagaggaggaattaaagaaaaaagaagaagaaaaaaagaaacatgaagaggaagag
agaaagaagcaagaagagcaggcaaaacgtcagcaagaagaagaagccgcccagttgaaa
gagaaagaggaatccttgcagcttcatcaggaagcttgggagcgacatcagttaaggaag
gaacttcgtagcaaaaaccaaaatgctcccgacagccgaccagaggaaaatttctttagc
cgactagattcaagtttgaagaaaaatactgcttttgtcaagaaactaaaaactattacg
gaacaacagagagactccttgtcccatgattttaatggcctaaatttaagcaagtacatt
gcagaagctgtagcttctattgtggaagcaaagctaaaaatatctgatgtgaattgtgct
gtgcacttatgctctctctttcaccagcgctatgctgactttgccccatcccttcttcag
gtttggaaaaaacattttgaggcaaggaaagaggagaaaacacctaacattaccaagtta
agaactgatttacgtttcattgcagaattgacaatagttgggattttcactgacaaggaa
ggtctttccttgatctatgaacagctaaaaaatattattaatgctgatcgggaatcccat
actcacgtttctgtggtgattagtttttgtcgacattgtggagatgatattgccggactt
gccccaaggaaagtgaagagcgctgccgagaagttcaatttgggttttcctcctagtgag
ataattagtccagagaaacaacaacctttccagaatcttttaaaagaatactttacgtct
ttgaccaaacacctgaaaagggaccacagggagctacagaatactgagagacaaaacagg
cgtattctgcattctaaaggagagctaagtgaagatagacataaacagtatgaggaattt
gctatgtcttatcagaagctgctggcaaattctcaatccctagcagaccttttggatgaa
aacatgccagatcttcctcaagacaaacccacaccagaagagcatgggcctggaattgat
atatttacacctggtaaacctggagaatatgacttggaaggtggtatatgggaagatgaa
gatgctcggaatttttacgaaaacctcattgatttgaaagcctttgttccagccatcttg
tttaaagataatgaaaaaagttgtcagaataaagagtccaacaaagatgattccaaagag
gcaaaagaacctaaggatagtaaggaagtatcaagtcccgatgatttagaacttgagttg
gagaacctagaaattagtgatgacactttggagttagagggtggcgatgaagctgaagat
cttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagcactggatct
catctcaagctcatagtagatgctttcctccaacagttgcccaactgtgtcaaccgagat
ctgatagacaaggcagcaatggatttttgcatgaacatgaacacaaaagcaaataggaag
aagttggtgcgggcactctttatagttcccagacaaaggttggatttgctaccattttat
gcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgttcc
atgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaacattgaaaca
aagaataaaacagttcgttttattggagaactaactaagtttaagatgttcacaaaaaat
gatacactgcattgcttaaagatgcttctatcagacttttcccatcaccatattgaaatg
gcatgtaccctactggaaacatgtggaagatttctttttagatctccagaatctcacctg
aggaccagtgtacttttggaacaaatgatgagaaagaaacaggcaatgcatctcgatgca
agatatgtcacaatggtggagaatgcatattactactgcaacccgcctccagctgagaaa
acagtgaaaaagaaacgtcctcctctccaggaatatgtccggaaacttttgtacaaggat
ctctccaaggttaccactgagaaggttttgagacagatgcgaaagttgccctggcaggac
caggaagtgaaagactacgttatttgttgtatgataaacatctggaatgtgaaatataat
agtattcattgtgtagccaacctcttagcaggactggtgctctaccaagaggatgttgga
atccatgttgtggatggagttttagaagatattcgattaggaatggaggttaatcaacct
aaatttaatcagagacgtatcagcagtgccaagttcttaggggaactttataattaccga
atggtggaatcagctgttatttttagaactctgtattcttttacttcatttggtgttaac
cctgatggctctccgagttcactggaccctcctgagcatcttttcagaattagactagtg
tgcactattttggatacctgtggccagtactttgacagaggttccagtaaaagaaaactc
gattgcttccttgtatattttcagcgttatgtttggtggaagaaaagtttggaggtttgg
acaaaagaccatccatttcctattgacatagattacatgatcagtgatacactagaactg
ctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacaagac
ttggaacgagaattcttaataaaactaggcctagtaaatgacaaagattcaaaagattct
atgacagaaggagaaaatcttgaagaggatgaagaagaagaagaaggaggagctgaaaca
gaagaacaatctggaaatgaaagtgaagtaaatgaaccagaggaagaggagggttctgat
aatgatgatgatgaaggagaggaagaagaggaagagaatacagattatcttacagattca
aacaaggagaacgaaactgatgaggaaaatacagaggtaatgattaaaggtggcggactt
aagcatgtgccttgtgtagaagacgaggacttcattcaagccctggataagatgatgctg
gaaaatcttcagcaacgaagtggcgaatctgttaaagtgcaccaacttgatgttgctatt
cccttgcacctcaaaagccagctcaggaaagggcccccacttggtggtggggagggagaa
gcagagtctgcagacacaatgccgtttgtcatgttaacaagaaaaggcaataaacagcag
tttaagatccttaatgtacccatgtcgtcccaacttgctgcaaatcattggaaccagcaa
caggcagaacaggaagagaggatgagaatgaaaaagctcacactagatatcaatgaacgg
caagaacaagaagattatcaagaaatgctgcagtctcttgcccagcgccccgctccagca
aacaccaatcgggagcggcggcctcgttaccaacatccaaagggagcgcctaatgcggat
ctaatctttaagactggtgggaggtag
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integrated database retrieval system
