Equus caballus (horse): 100070114
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Entry
100070114 CDS
T01058
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
ecb
Equus caballus (horse)
Pathway
ecb03013
Nucleocytoplasmic transport
ecb05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100070114 (NUP188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100070114 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100070114 (NUP188)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100070114 (NUP188)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
HEAT_SCC3-SA
TRS130_4HB
Gar1
Motif
Other DBs
NCBI-GeneID:
100070114
NCBI-ProteinID:
XP_023484848
Ensembl:
ENSECAG00000006134
VGNC:
20963
LinkDB
All DBs
Position
25:32646829..32723333
Genome browser
AA seq
1745 aa
AA seq
DB search
METSWSSRELWTILLGRSALRELNQIEAELSKHWQRLLEGLSYYKPPSPNSAEKVKANKD
VASPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRGSLKSVLQDERQSQALILKIA
DYYYEERTCILRCVLHLLTYFQDERHPYRVEYADCVDKLEKELVTKYRQQFEELYKTEAP
TWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPSDLLVLTKMFKEQGFGS
RQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKCALDDRRELHQLAQDGLICQDM
DRLMLTFGDIPHHAPVLLAWALLRHTLSPDETSSVVRKIGGTAIQLNVFQYLTRLLRSLA
SGGNDCTTSTACMCVYGLLSFVLTSLELHTLGNQQDVIDTACEVLADPSLPELFWGTEPT
SGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELYKHKPHDVV
SHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTLFTCEI
EMLLHVVSTADVIQHCQRVRPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRLTTVISP
PVDVIASCVNCLTILAARNPAKVWTDLRHTGFLPFVAHQVSNMSQMISAEGMNAGGYGNL
LMNSEQPQGEYGVTIAFLRLIATLVKGQLGSTQSQGLVPCVMFVLKEMLPSYHKWRYNSH
GVREQIGCLILELIHAILNLCHETDLHSSHTPSLQSLCICSLAYTEAGQTVINIMGIGVD
TIDMVMAAQPRSDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQALTQHGA
HGNNLIAILAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGNDAAAIRDAFLIRLQ
SKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGVWSCLHAVLELI
DSQQEDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGTLSPPSE
TSEPSVLETCALVMKIICLEIYYVVKGSLDQSLKDTLKKFSSENRFTYWSGYVKSLAVHT
ADTEGSSCTSLVEYQMLVSAWRMLLIIATSHAEIMHLTDSAVRRQLFLDVLDGTKALLLV
PASVNCLRLGSMMCTLLLILLRQWKRELGSVDEILGPLTEILEGVLQADQQLMEKTKAKV
FSAFITVLQMKEMRVSDIPQYSQLVLNVCETLQEEVIALFDQTRHSLASGSAAEDKDSME
TDDCSRLRHKDQRDGVCVLGLHLAKELCEVDEDGDSWLQVTRRLPILPTLLTTLEVSLRL
KQNLHFTEAALHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLSTNGTVQTPSTSRK
SLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFMGVHQERTLQCLSAVRTVQSLACL
EEADHTVGFILQLSSFMKEWHFHLPQLMRDVQVSLGYLCQACTSLLHSRKMLQHYLQNKN
GDGIPSAVTPRVQRPPTAAPAAPSCSSSKQPSADTEASEQRALHTVQYGLLKILSRTLAA
LRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVAPSFGTLLATVNVALNMLGEL
DKKKEPLTQAVGLSTQAEGTKTLKSLLMFTMENCFYLLISQAMRYLRDPAVHPRDKQRMK
QELSSELSTLLSSLSRYFRRGAPSSPAAGVLPSPQGKSTSLSKASPESQEPLIQLVQAFV
RHVQR
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atggaaacctcatggagcagtagagaactgtggacaattctgcttggaaggtcggctctg
agagaactgaatcagattgaggcagaactgagtaaacattggcagcggctgttagagggg
ctttcttactacaaacctcccagtccgaattccgctgaaaaagtgaaagctaataaagat
gtagcttcacctctgaaggaactgggtttaagaatcagcaagttcttgggtcttgatgaa
gaacagagtgtacagttactccagtgttaccttcaagaggattacagaggtacccggggc
tcactgaagtcagtactgcaagacgagaggcagagccaggccctaatcctgaagattgca
gattattactatgaagaaagaacctgtatccttcgttgtgtcttacaccttctcacttac
ttccaagatgaaagacacccctatagggttgagtatgcagactgtgttgataaattggag
aaggagctagttacaaaatacagacagcagtttgaagagctttataaaactgaagcacca
acgtgggagacacatggaaacctcatgactgagcgccaagtgtctcgctggtttgttcag
tgtcttcgggaacagtccatgctgctagaaatcattttcctttattatgcatactttgag
atggcgcctagtgacttactggtattaaccaagatgtttaaagagcaaggatttggtagt
aggcagaccaacaggcacctggtggatgagaccatggatccttttgtggaccggattggc
tacttcagtgcccttatcctggtggagggcatggatattgaatccttgcataagtgtgct
ctggatgacaggagagagctgcaccagttggcccaggacgggcttatttgtcaggatatg
gaccgtttgatgttgacctttggggacattccacatcatgccccagtgcttttggcttgg
gctctcctccgtcacaccctgagtccagatgagacaagcagtgttgtccggaagataggt
ggcacggccatccagctgaatgtatttcagtacttgacccgactactccgctcactagcc
agtggaggaaatgattgtaccaccagcactgcgtgcatgtgtgtctatggactcctttct
ttcgttctgacctcgctggagctgcacacgctgggcaatcagcaggatgtaatcgacaca
gcatgtgaagtcctggcagacccttctcttccagaactgttctggggaacagagccaacc
tctggtcttgggatcattctggacagtgtgtgtggaatgtttcctcatctcctctccccg
ctcctgcagttgctacgagcccttgtatcagggaagtctactgccaaaaaggtgtatagt
ttcttggataagatgtctttctacaatgaactttataagcacaagccccatgatgtggtc
tcccatgaagatggaactctgtggcggaggcaaacacctaaactcctttatcctcttggg
ggtcagaccaaccttcgcatacctcaaggcactgtgggccaagtaatgctggatgacagg
gcttacctggtgcgctgggaatactcctacagcagctggaccctctttacctgtgagatt
gaaatgctgcttcatgttgtttccactgcagacgtgattcagcactgtcagcgggtcaga
cccatcattgatctggtccataaggtcatcagtacagatctgtccatagcagactgtctc
ctgcccatcacgtctcgcatctacatgctgctgcagcggttaaccacagtgatctccccg
cctgtggatgtcattgcttcttgtgtcaattgcttgaccattttggctgcccggaaccct
gcaaaggtctggactgatcttcgtcacacaggctttttaccattcgtggcccaccaggtc
tccaacatgagtcagatgattagtgcagagggaatgaatgctggagggtacggaaacctc
ttgatgaatagtgaacagccccagggcgagtatggggtcactattgcctttctgcgcttg
atcgccactcttgtcaaggggcagcttggcagtacccagagccaagggctggtgccctgt
gtcatgtttgtgctgaaggagatgcttcctagctaccacaagtggcgctacaactcacat
ggtgtgagagaacagattggttgcctgatcctggagctgattcatgcaatactgaacctg
tgccatgagacagacctgcacagcagtcacacccccagcctgcagtctctctgcatctgc
agcctggcctatacagaagcaggacagacagttattaatatcatgggcatcggcgtggac
accattgacatggtgatggctgctcagccacgcagtgatggggcagagggccaggggcag
ggccagctgctgatcaagacagtgaaactggcattctccgttaccaacaatgttattcgg
ctgaaacctccttctaatgtggtatcccctctggaacaggctctcacacaacatggtgcc
catgggaacaacctcattgctattcttgccaaatacatctaccacaaacatgatcctgct
ttgccgcgccttgccatccagctgctgaaacgtctggccacggtggccccaatgtcagtg
tatgcctgtctgggcaatgatgcggctgccattcgagatgccttcctgatccgactacag
agcaagattgaggacatgcgcatcaaagtcatgattctagaattcctcacggttgcagta
gagactcagccaggcctcattgaactatttctgaatctggaggtgaaggatggcagtgat
ggctccaaggaattcagccttggggtatggagctgtctccatgcggtgctggagctgatt
gattcccagcaagaggatcgctactggtgcccacccctgctgcatcgtgcggccattgcc
tttctgcatgccctgtggcaggaccgtcgggacagtgccatgttggtcctcagaaccaaa
cccaagttttgggagaatttaaccagtccactgtttggcaccctttctcctccctcagaa
acatctgagcccagcgtcctggaaacttgtgccctcgtcatgaagataatttgcttggag
atatactatgtagttaagggctcattagaccagtcattaaaagatacactcaagaaattt
tccagcgagaatcgcttcacctactggtcagggtatgtcaagtccttggcagttcacacg
gctgacacagagggcagcagctgcacctccttggtagagtatcagatgctggtctccgcc
tggaggatgcttctcatcattgccacaagtcacgcggagataatgcacctgaccgactct
gcagtgcgtcgccagctctttcttgacgtgcttgatgggaccaaagcgttactcctagtc
ccggcctcagtgaactgcctccgcctcggctccatgatgtgcactctgctgctcatcctc
ctccggcagtggaagagagagttaggttctgtggatgaaatcctcggaccgttgacggag
atattggagggagtgctgcaggcagaccagcaactcatggagaagaccaaggccaaggtg
ttctcagcattcatcacagtgttgcagatgaaggagatgagagtgagtgacatccctcag
tactcccagctggtgctgaatgtctgtgagaccctccaggaagaggtgattgcactcttc
gaccagacccgccatagtctggcttcgggcagtgccgcggaggacaaggacagcatggag
actgatgactgctcacggctccgccacaaggaccagcgtgatggggtgtgtgtcctgggc
ctgcacctggccaaggagctgtgtgaggtggatgaggatggtgactcgtggctgcaggtg
acccgcaggctccccatcctgccgaccctcctcactaccctagaggtgagccttcgcctg
aagcagaacctgcacttcactgaggcggcgctgcacctgctcctcaccctggctcgcacc
cagcagggagccacagcagtggctggagccggcatcacccagagcatttgtttgcccctc
ctgagtgtgtaccagctcagcaccaatgggacggtgcagacacccagcacttctcggaaa
tccctggatgccccctcttggccgggggtctaccgcctgtcaatgtctttgatggagcgg
ctccttaaaactctgcgctacaacttcctcaccgaggccctggacttcatgggcgttcat
caggaacggaccctacagtgcctcagtgcggtgaggacagtgcagagtctggcctgcctg
gaggaggcggaccacactgtgggcttcattctgcagctctccagcttcatgaaggaatgg
cacttccacctgcctcagctcatgcgggatgtccaggtcagcctgggctacttgtgccag
gcctgcacctccctcctgcacagccgcaagatgctgcagcactacctgcagaacaaaaat
ggggacggtatcccctcggctgtcacccctcgagttcagcggccacccacagctgcccct
gctgccccctcctgctcttcctccaagcagccctctgctgacacagaggcctcggagcag
cgagccttgcacacagtccagtacggccttctcaagatcctcagcaggaccctggcggcc
ctgcgccacttcaccccggacgtctgccagatcctgctggaccagtccctggaccttgct
gaatacaacttcctatttgccctgagctttaccactcccacctttgactctgaagtggcc
ccttccttcgggacccttctggccacagtgaatgtggccctaaacatgcttggagagctg
gacaagaaaaaggagccactcacccaggctgtggggctcagcacacaggcggaagggacc
aaaacactgaagtctctcctcatgtttaccatggaaaactgcttctacctgctcatctcc
caggcaatgcgttaccttagggacccagctgtgcacccccgggacaaacagcggatgaag
caggagctcagctcagagttgagcacgctgctttccagcctctcgcgctacttccgccgg
ggagcccccagctcccctgctgctggtgtcctcccctcgcctcagggcaagtccacctct
ctctccaaggccagccctgagagtcaggagcctctgatccagctagtgcaggcctttgtc
cgacacgtgcaaagatag
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integrated database retrieval system
