Equus caballus (horse): 100070629 Help Entry 100070629         CDS       T01058                                  Symbol SPG11 Name (RefSeq) spatacsin isoform X1   KO K19026   spatacsin Organism ecb  Equus caballus (horse) Pathway ecb05014   Amyotrophic lateral sclerosis ecb05022   Pathways of neurodegeneration - multiple diseases Brite KEGG Orthology (KO) [BR:ecb00001]  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     100070629 (SPG11)    05022 Pathways of neurodegeneration - multiple diseases     100070629 (SPG11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:ecb03400]     100070629 (SPG11) DNA repair and recombination proteins [BR:ecb03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      100070629 (SPG11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  100070629 NCBI-ProteinID:  XP_023474260 Ensembl:  ENSECAG00000001155 VGNC:  23515 LinkDB All DBs Position 1:145991359..146068721 Genome browser AA seq 2371 aa AA seqDB search MERVLPMLLVPVPAETTGRLGARAQLHREQEVLGSLTASGCLQVLSLAPGGRGGGGCRLD GPFRHFVWEDSHNSSAPTDKPRLLALTDNYELLVYEFNLKDGRCDATILYSYSEERLQKL VEDLNISISLLSLRILSFHNNTSLLFINKCIILQVVFLERDTEIRVLNCFTLPLPTQAVD RIIDTQLCRGILFVLSSLGWIYIFDIVDGTHVAHVDLALHQEDMCNEQQQEPAKISSFTS LKVSQDLDVVVIVSSSNSAIALNLNLYFRQHPGHLLCERTLEDSPIEGPKEIDEDDPANS DYNMKLTKFSFQVDRSWKAQLSSLNETIKSSKLEVSHCAPWFQDILHVEPSESGNHGTSV PGWAFIPQDIMGRQYNFPQKDHTKTNDPGRSWKVVHINEQEEPIKLKCVSVTGFTALFTW EAERMGCTIVLWDLETQGMQCCPLGKKCIPVDSSGDQQLCLVLTESGLSLILFGLTQEEF LNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFFLKSKENLLNPSSK SSVADQLDHFPSHLYLRNVEELTPALDLLCSAIRESDSETQSKHFSEQLLNLTLSFLNKQ IKELFIHNEELDEHLQKGVNILTSYINELRTFMIKFPWKLTDAIDEYDANENVPKVKESH MWEKLSVEEVITNAVLNNKIPEAQTFFRINSHSAQRLEELIRIGLDLVFDSLKKNNIKEA SELLKNMGFDVKDQLLKICFYTTDKNIRDFLVEILKEKNYFSEKEKTTIDFVHRVEKFYS GHFQENVQIQSFPRYWIKEEDFFKHKSVLDSFLKHDHKDKFNRQDHRIVLNWAQWWNRIT QESILLPRISPEEYKSCSPEALWRYLTARHDWLNIVTWIGEFQTQSSDSSLQQHKWPPLT VDVIDHNTCCSNYMRNEILDKLARNGIFLRSELEDFELFLLRLNRIGGVMQDTLPVQNYR SKEGWDFHSHFILYCLERSLQYLLYVYLDCYKLSPPNCPFLERKELHEAHPWFEFLVQCR QVSSNLTDPKLIFQASLANAQILIPSNQASVSSMLLEGHTLLALATTMYAPGGVSQVVQN EENENCLKKVDPQLLKMALTPYPKLKTALFPQYTAPSVLPPDITLYHLLQSLLPFDPSRL FGWQSANTLAIGDASSHLPHFSSPDLVNKYAIVERLNFAYYLHHGRPSFAFGTFLVQELT KSKTPKQLIQQVGNEAYVLGLSSFHVPSIGAACVCFLELLGLDSLKLRVDMKVANIILSY KCGNEDAQYSFIRESLAEKLSKLAAGEKATTEELLILLEEGIWNSIQQQETKRLSSESSS QWALVVQFCRLHNVKLSTSYLIECAKANDWLQFIIHSQLHNYHPEEVKSLLQYFSPVLQD HLQLAFENLPSVSNSRMDNDQVCNRSPQELQRNKEDTTDFFKILLQCSEEPNSWCWLLAE AVKQQAPILSVLASCLQDSSAIPCLCVWIITSVEDSVAAEAMGQIQGSTEGHTWDLEDLS VIWRTLLTRQKSKTLIRGFQLFFKDSPLLLMMEMYELCMFFKNYKEAKAKLLEFQKNLET LETAATKVHTVIPAPWLKEQVCFLLKLMLQQCRTQYELGKLLQLFVGVEHLFPDGPDVKK LCVLSQILKDTSIAINHVIITSYSLETFQHECRSILEKLETDGQFALARRVAELAELPVD NLVIEEITQEMQTLKHIDQWSLKQAKIDFWKKCHENFKKNSISSKAASSFFSAQALVACA YPTEEGQSSVEERHLLLTLAGHWLAQEDPVPVNQLEELEKQIWLCRITQHTLRGSQGETE PRFSQQISTSGELSFDSLASEFSFSKLAALNTSKYLELNGLPSKETCENRLDWKEQASLH FLIGRLLDDGCVHEASRVCRYFHFYNQDVVLVLHCRALASGEAGVDDLHPEIHALLQSAA LPEGEEEPGIPLRKAQSNVAAQDGEAMLRTILASQQPDRCKRAQAFISTQGLEPDTVAEL VAEEVTRELLTPSERAGQKQMFTPAEESQTFLPLTTLCADRTLVGMKLLDKISSVPHGEL SCTTELLILAHHCFTLTCHMEGIIRVLQAARLLTDNHLAPNEEYGLVVRLLTGIGRYNEM TYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIG ENHEAAACIQLKLIESQPWEDSLKDGHQLKQLLLKALTLMLDAAESYAKDSCVRQALHCH RLTKLITLQIHFLNTGQNTMLINLSRHRLMDCIMTLPRFYQASIVAEAYDFVPDWAEILY QRVILKGDFNYLEEFKQQRLLKSNIFEEISKKYKQHQPTDTVVKNLKKLLTYCEDVYLYY KLAYEHKFCDIVNVLLKDPQIGCCLKDMLAG NT seq 7116 nt NT seq  +upstreamnt  +downstreamnt atggagcgggttctgcctatgttgttggtgccagtccccgccgagacaacggggcggctg ggggcccgggcgcagctgcacagagagcaggaggttctggggagcctgacggcctcgggc tgccttcaagtgctctccttggcgcccggaggccggggcgggggcggctgccgcctggat ggcccctttcggcattttgtgtgggaggattctcataacagcagcgcaccaacagacaag cccagactgctcgctcttactgacaattatgaactgctcgtctatgaatttaatttgaaa gatggaagatgtgatgcaaccattttgtatagctatagtgaggagagattgcaaaagctc gttgaagatctaaatatcagtatttccttattatctttgagaattctgtcatttcacaat aacacatcattattgttcatcaacaagtgtatcatcctgcaggttgtatttcttgaaaga gatactgagattagagtactcaactgttttacattacctctgcctacacaggcagtggac aggattattgacacgcagctctgcagaggaattctctttgttttgagtagtttaggctgg atctatatttttgacattgtggacggtacacatgtagctcatgtggatttagcacttcac caagaagatatgtgtaatgagcaacaacaggagccagccaagatttcttcttttacttca ctgaaagtgtctcaagacctagatgttgtagtgattgtcagctcctccaactctgcaatt gctcttaacttaaatttgtatttcaggcaacacccaggacacctactatgcgaaagaact ctagaagacagtcctattgaaggccctaaggagatagatgaagatgatcctgctaattct gactacaacatgaaactgaccaagttttccttccaagttgataggtcttggaaagcccag ctatcatcattgaatgaaacaataaagagctccaagctggaggtttcccattgtgctcca tggttccaggatattttacacgtggagccttctgaatctggtaaccacggtaccagtgtg ccaggctgggccttcattccacaggacataatgggccgccagtataattttccacagaaa gatcacaccaagaccaatgatccaggaagatcctggaaagtagtgcacatcaatgaacaa gaggaacccatcaagcttaaatgtgtgtctgtgacaggattcactgcactgtttacttgg gaagcagagaggatgggctgcaccattgtcctttgggatttggagacccagggcatgcag tgttgtcctcttggcaaaaaatgtattcctgtagacagcagtggagaccagcagctgtgc cttgttttgacagaaagtggactttccctgattttgtttggtttgactcaagaggagttt ttaaatagactaatgatccatggaagtgccagcactgtggactctctctgccatctcaat ggttgggggaggtgctcaatccccatacatgcactagaggctggcatagaaaatcgtcag ctggacacagtagatttctttttgaagagcaaggaaaatcttttgaatccatcctcaaaa tcttctgtagctgatcagcttgaccactttccatcccatttgtatttaagaaatgtggaa gagctgacaccagcattggatttactttgctcagcaattagagaaagtgattctgaaacc cagagcaaacacttctcagaacagttgcttaatcttacactgtctttccttaacaaacaa ataaaggagctttttattcacaatgaagagctagatgaacatctacagaagggagtgaac attttgaccagctacattaatgaacttcgaaccttcatgataaagtttccttggaagcta acagatgccatagatgaatatgatgcaaatgaaaatgtccccaaagtaaaggagagccat atgtgggagaaactcagcgttgaggaagttatcaccaatgccgttttaaacaacaaaata ccagaggcacaaactttctttaggattaacagtcattctgctcaaagacttgaggagctg attagaataggcctagatttggtctttgacagtttgaaaaagaataatataaaggaagcc tccgaacttttgaagaatatgggctttgatgtaaaagaccagctgctcaagatatgcttc tatacgactgataaaaatatacgggactttttggttgaaattttaaaagaaaaaaattat ttttctgaaaaagaaaaaacaactatagactttgtgcatcgagttgagaagttttattca ggacatttccaagaaaatgtgcagatccagtcctttcccagatattggataaaggaagaa gattttttcaagcacaaatctgttttggactcattcctgaaacatgaccataaagataaa tttaacagacaggatcatagaattgtgttaaattgggcccagtggtggaatcgaataaca caagaatccatccttctccccaggataagtccagaagaatacaaatcatgttctcctgaa gccctctggaggtacctcacagctcgccatgattggttaaacattgtcacgtggattgga gaatttcagacccagagtagtgattcttcacttcagcagcacaagtggccccctctgact gttgatgttattgaccacaacacttgctgcagcaactacatgaggaatgaaattttagat aagttggccaggaatgggatttttcttagatctgaactagaagactttgaactcttcctc ttaagactgaaccgtattgggggtgtgatgcaagataccctccctgttcaaaactacagg tccaaagaaggttgggacttccattctcacttcattctctattgtttggaacgcagtctg cagtatcttctttatgtctatctagactgttacaaacttagtcctcctaattgtcctttt ttggaaagaaaagaattacatgaagctcacccgtggtttgaatttttagttcagtgtcga caagtttccagtaatttaacagatcccaaattaatcttccaggctagccttgcaaatgct cagattctgattcccagcaaccaggccagtgtgagcagtatgctattggaaggacatacc ctcctggcccttgctaccacaatgtatgctcctgggggtgtcagccaggttgttcagaat gaagaaaatgagaactgtttgaagaaagtagacccccagctactgaagatggcattaact ccttaccccaagcttaaaactgctctcttcccacagtacactgcccctagtgtcctgcca cccgacattacactctaccaccttcttcagtcgttattgccctttgatcccagcagattg tttggctggcagtctgccaacacactagctataggagatgcatcgagtcacctcccccat ttctctagcccagacctggttaataagtatgctatcgtggaacgtctgaattttgcttat tatttacatcatggacggccatcatttgcatttggtacttttctggtccaggaattaacc aagagcaagactcccaagcagctgatccagcaagtaggcaatgaagcctatgttttaggc ctctcctccttccatgtaccttcaataggagctgcctgtgtttgtttcttggaattgctt ggcctcgacagcctcaagctcagagttgatatgaaagtggccaatataattttgagctac aagtgtggaaatgaagatgctcagtacagctttatcagggagtctctagctgaaaaacta tctaaactggctgcgggtgaaaaggcaaccacagaagaattgcttattctcttagaagag ggtatatggaacagcattcagcagcaggaaacaaagagattatccagtgaatccagcagc caatgggcattagtggtacaattctgcaggctccacaatgtgaaactgagcacgtcttac cttatagagtgtgccaaagcaaatgactggttacagttcattattcatagccagctccat aattaccacccagaggaggtgaaatctcttctccagtatttcagccctgtccttcaagac cacttacagctggcttttgagaacttgccctcagtgtccaactccagaatggacaatgat caagtctgcaacaggtccccccaggaactccagagaaacaaagaagatacgactgatttc tttaaaattctgctgcagtgctcagaggagccaaactcctggtgttggctcctagctgaa gcagtgaaacaacaggcccctatcctcagtgtcctggcctcgtgtctccaggattccagt gctattccttgtctctgtgtttggatcatcacttctgtggaggacagtgttgcagctgaa gcaatgggacaaattcagggttcaacggagggccacacttgggaccttgaggacctctct gtcatctggaggacattattaacgagacagaagagcaaaactctcatcagaggtttccaa cttttctttaaggattccccgttgctattgatgatggaaatgtatgaactgtgtatgttc ttcaagaattataaggaagccaaagcaaaactattggagttccagaagaatcttgaaact cttgaaacagcagccacaaaggtccacactgtcatccctgccccatggctgaaggagcag gtgtgctttcttttgaagcttatgctgcagcagtgtaggacccagtatgagctggggaag cttttacagctgtttgttggagtagagcatctcttccctgatggtccagatgtgaagaag ctgtgtgtcctcagccagattttgaaagatacgtccatagccattaatcatgtaattatt accagctacagccttgagacttttcagcatgaatgtagatctatcttggaaaaactggag acagatggacagtttgctttggccaggagagtagcagaattagctgagttacctgtggac aacttggttattgaagagataacacaggaaatgcagaccttaaaacacattgaccagtgg tctctgaaacaagcaaaaattgacttctggaaaaaatgccatgagaattttaagaaaaat tccatttcaagcaaagcagcttcttcctttttctcagcccaggcccttgtggcatgtgcg tacccgactgaggaggggcagagcagcgttgaggagcgccatctgctgctcaccctggca gggcactggcttgctcaggaggacccggtgcctgtcaaccagctggaggagctggagaag cagatctggctgtgccgcatcacccagcacaccctcagaggaagccagggggaaacagag cccagattttctcaacagatctcaactagtggggaactttcttttgatagcttagccagt gagttttcattctccaagttggctgctctgaacacatcaaaatacttagaacttaatggc cttccatccaaagagacttgtgagaacagactggattggaaggagcaggcgtcactacac tttttgattgggcgcctcttggatgatggctgtgtgcatgaagcaagtagagtgtgccgg tattttcatttctacaaccaagatgttgtcttggtattgcactgtagagcactggcttca ggtgaagctggtgtggatgacctgcatccagagatccatgctctcctacaaagtgctgcg ctgcctgagggagaagaagaacctggcattcctctaaggaaagcccaaagcaatgtggct gcccaggatggtgaggccatgctccggacaatcttggcctctcagcagcctgaccggtgc aagcgagcccaagccttcatcagcacccagggcctcgagccagacacggtggctgaactt gtggccgaggaggtgaccagagagctgctgaccccatcagaaagagcaggacagaagcag atgttcaccccagcagaggaaagccagacttttcttccactgaccactttgtgtgcagac cgcacattggtaggcatgaagttgttggataagatttcctccgttccccatggggagttg tcttgcaccacagagctgctgatcctggcccatcactgcttcacgctgacatgccacatg gagggcatcatccgagtcctgcaggccgcccggctgctcacagacaaccacttggccccc aatgaagagtacgggctggtggtgcgtctcctcactggcattggaaggtacaatgagatg acatacatatttgatttgctgcataaaaagcactactttgaagtgctgatgaggaagaaa ttagatccgagtggtaccctgaagacagccctactcgactacatcaaacgctgccgccct ggggacagtgagaagcacaacatgattgccttgtgcttcagcatgtgccgtgagattggg gagaaccatgaggcagctgcctgcatccagctgaaattgatcgagtctcagccctgggag gacagcctcaaagatgggcaccaactgaagcagctgctgctgaaggccctgactctgatg ctggatgcagcagagagttatgccaaggactcttgcgtgcgacaggccctgcactgtcat cggctcaccaagttgataacactgcagattcactttctgaacactggccagaacacaatg ctcatcaacctgagccgccacaggctgatggactgtatcatgaccctacctcggttctac caggcttctattgtggcggaggcctatgactttgttcctgattgggctgaaattctatac caacgagtgattcttaaaggagactttaattacttggaagagtttaagcagcaaaggtta ttaaaatccaatatatttgaagagatttcaaaaaaatataaacaacatcagcctaccgac acagttgtgaaaaacctgaagaagttactcacgtattgtgaagatgtctacttgtattac aaactagcttatgaacacaaattttgtgatattgtaaatgtgcttctgaaggaccctcag atagggtgctgtttaaaggacatgctagcaggttag

DBGET integrated database retrieval system