KEGG   Equus caballus (horse): 100070928
Entry
100070928         CDS       T01058                                 
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X2
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ecb  Equus caballus (horse)
Pathway
ecb03018  RNA degradation
ecb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ecb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100070928 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100070928 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecb03019]
    100070928 (LSM4)
   03041 Spliceosome [BR:ecb03041]
    100070928 (LSM4)
Messenger RNA biogenesis [BR:ecb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100070928 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100070928 (LSM4)
Spliceosome [BR:ecb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100070928 (LSM4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 100070928
NCBI-ProteinID: XP_001500651
Ensembl: ENSECAG00000010141
VGNC: 19820
LinkDB
Position
21:complement(3609098..3620594)
AA seq 139 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
PGTGRGQPEKKPGRQAGKQ
NT seq 420 nt   +upstreamnt  +downstreamnt
atgctgcccttgtcgctgctcaagacggctcagaatcaccccatgttggtggagcttaaa
aacggggagacgtacaatggtcacctggtgagctgtgacaactggatgaacatcaacctg
cgcgaggtgatctgcacatccagggacggggacaagttctggcggatgcccgagtgctac
attcggggcagcaccatcaagtacctgcgcattcctgacgagatcattgacatggtcaag
gaggaggtggtggccaagggccgtggccgcggaggcctgcagcagcagaagcagcagaag
ggccgaggcatggggggcgccgggcgaggtgtgtttggcggccggggccgcggtggcatc
ccaggcacaggccggggtcagcccgagaagaagccgggccgccaggcaggcaagcagtga

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