Equus caballus (horse): 100070949
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Entry
100070949 CDS
T01058
Symbol
SYMPK
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
ecb
Equus caballus (horse)
Pathway
ecb03015
mRNA surveillance pathway
ecb04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100070949 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100070949 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecb03021
]
100070949 (SYMPK)
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100070949 (SYMPK)
Transcription machinery [BR:
ecb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100070949 (SYMPK)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100070949 (SYMPK)
U7-dependent histone pre-mRNA processing factors
100070949 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
100070949
NCBI-ProteinID:
XP_023505699
Ensembl:
ENSECAG00000008163
VGNC:
23795
UniProt:
A0A9L0R7X6
LinkDB
All DBs
Position
10:complement(16471309..16511188)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSAPVELTDQWEEDKMSKENRRMGVPTAAMAGSSGDSVTRRSVASQFFTQEEGPGIDGMT
TSERVVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKF
VIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVIS
ELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEVPRRQEHDI
SLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFM
SEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTP
QAEIARNMPSGKDARKRPRDDSDSALKKMKLEPNLGEDDEDKDLEPGPSGTSKASAQISG
QSDTDITAEFLQPLLTPDNVANLVLISMVYLPEAMPASFQAIYTPVESAGTEAQIKHLAR
LMATQMTAAGLGPGVEQTKQCKEEPKEEKVVKPESVLIKRRLSAQGQAISVVGSLSSMST
LEEEAPQAKRRPEPIIPVTQPRLAGAGGRKKIFRLSDVLKPLTDAQVEAMKLGAVKRILR
AEKAVACSGAAQVRIKILASLVTQFDSGLKAEVLSFILEDVRARLDLAFAWLYQEYNAYL
AAGASGTLDKYEDCLIRLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESR
TYLGMSTLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRSQALLFIKRMYEKEQLREYVEK
FALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAV
YTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSP
ELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHG
EGNSALSPLNPGELLIALHNIDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQ
SPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQ
VILQLPPQQLGAVFDKCPELREPLLAHVRSFTPHQQAHIPNSIMAILEASGKQEPEAKEA
PTGPLEEDDLEPLALAPAPAPRPPQDLIGLRLAQEKALKRQLEEEQKLKPGGAPSSSSSS
SARPGPPQPEEAIDFREEGPECETPAIFISMDDDSGLTEAALLDSSLEGPLPKEAAASGL
TAKEERSPQTLTPAGEDTVKTPSPAAAEEAGESENKGNS
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcccccgtggagctgacagaccagtgggaagaggacaagatgagcaaggaaaac
cgacgcatgggagtaccgacagcagccatggcaggcagcagtggggacagcgtcactcgc
cggagcgtggcatcacagtttttcacacaagaggaggggccaggcatcgatggcatgacc
acctcagagagagtggtggatctcctcaaccaggcagcgctgatcaccaacgattcaaag
atcacagtgctcaaacaggtccaggaactgatcatcaacaaagatcccacactcttggac
aacttcctggatgagatcatcgctttccaagcagacaagtcgattgaagtgcgcaaattt
gtcatcggcttcatcgaggaggcatgcaagcgagacattgagttactgctgaaactgatc
gcgaacctcaacatgctcttgagggacgagaacgtgaatgtggtgaagaaggccatcctc
accatgacccagctctacaaggtggccctgcagtggatggtgaagtcacgggtcatcagt
gagctccaggaggcctgctgggacatggtgtctgccatggctggggacatcatcctgctg
ttggactctgacaatgacggcatccgcacccatgccatcaagtttgtggagggcctcatt
gtcaccctgtcaccccgcatggctgactcggaggtgccccgacgccaggagcatgacatc
agcctggaccgcatccctcgcgaccatccctacatccagtacaatgtgctgtgggaagag
ggcaaggcggccttggagcagctgctcaagttcatggtgcaccccgccatctcctccatc
aacctgaccacggccctcggctccctcgccaacattgcccgccagaggcctatgttcatg
tctgaggtgatccaggcctatgagaccctgcacgccaacctgcccccgacgctggccaag
tctcaggtgagcagtgtgcgcaagaacctcaagttgcacctgttgagtgtgctgaagcac
ccggcctccctggagtttcaggcccagatcaccaccctgctggtggacctgggcacgcct
caggctgagatcgcccgcaacatgcccagcggcaaggatgcccgcaagcggccccgagat
gactcagattctgcactcaagaagatgaagctggagcccaacctgggggaagatgacgag
gacaaggacttggaaccaggcccatcggggacctcgaaggcctcagcccagatctcaggc
cagtcggacacagacatcactgctgagttcctacagcctctgctgacgcctgacaacgtg
gccaatctggtcctcattagcatggtgtacctgcccgaggccatgcccgcctccttccaa
gccatctataccccagtggagtccgcaggcactgaagcccagatcaagcacctggctcgg
ctcatggccacccagatgacagctgcaggactggggccaggcgtggagcagacgaaacag
tgcaaggaggagcccaaggaggagaaggtggtgaagccagagagcgtcctgatcaagcgg
cgcctgtcagcccagggccaggccatttcggtggtgggctccctgagctccatgtccacg
ctggaggaggaggcgccccaggccaagaggaggccagaacctatcatccctgtcacacag
ccccggctggcaggcgccggtgggcgcaagaaaatcttccgtctgagcgatgtgctgaag
cccctgactgatgcccaggttgaggccatgaagctgggcgctgtgaagcggatcttgcgg
gctgagaaggctgtggcctgcagcggggcggcccaggtgcgcataaagatcctggccagc
ctggtgacacagttcgactcgggcctgaaagccgaggtcctgtccttcatcctggaggac
gtgcgggcccgcctggacctggccttcgcctggctctaccaggagtacaatgcctacctg
gcagccggtgcctcgggcaccctggacaagtacgaggactgcctcatccgcctgctctcc
ggcctgcaggagaagccagaccagaaggatgggatcttcaccaaggttgtgctggaggcg
ccgctgatcaccgagagtgccctggaggtgattcgcaagtactgtgaggatgagagtcgc
acctacctgggcatgtccactctccgagacctgatcttcaagcgcccgtcccgccagttc
cagtacctgcatgtcctgctcgacctcagctcccatgagaaggacaaggtgcgttcccag
gccctgctattcatcaagcgcatgtacgagaaggaacagctgcgagagtacgtggagaaa
tttgccctcaactacctgcagctcttggtccaccccaacccgccgtctgtgctgtttgga
gctgacaaggacacagaggtggcagcgccttggaccgaggagacagtcaagcagtgtctg
tacctctacctggccctcctgcctcagaaccacaagctgatccatgagctggcggccgtg
tacactgaggccatcgccgacatcaagcggacagtgctaagggtcatcgaacagccgatc
cgaggaatgggcatgaactcgccagagctgctcctgctggtggaaaattgtcccaagggg
gcagagacgctggtcacacggtgtctgcacagcctcacagacaaagtcccaccctccccg
gagctggtgaagcgggtccgggatctctaccacaagcgactgccagacgtccgcttcctc
atccctgtgctcaatgggctggagaagaaagaagtgatccaggccctgccaaagctcatc
aagctcaaccccatcgtggtgaaagaggtcttcaaccgcctgctgggcacgcagcacggc
gaagggaactcggccctgtcccccctgaaccccggagagcttctgatcgcattacacaac
atcgactcagtgaagtgtgacatgaagtctatcatcaaagccaccaacctgtgctttgcg
gagcggaacgtgtacacatcggaggtgctggccgtggtgatgcagcagctgatggagcag
agtcccctgcccatgctgctcatgaggaccgtcatccagtccctgaccatgtacccccgc
ctggggggcttcgtcatgaacatcctgtcccgcctcatcatgaagcaggtgtggaagtac
cccaaggtgtgggagggcttcatcaagtgctgtcagcgcaccaagccccagagcttccag
gtcatcctgcagctgccgccccagcagctgggcgccgtctttgacaagtgccccgagctc
cgggagcccctgctggcccacgtccgctccttcaccccccaccagcaagcacacatcccc
aactccatcatggccatcctggaggccagcggcaagcaggagccagaggccaaggaagca
cccactgggcccctagaagaggacgacctggagcccctggccctggccccagccccggcc
ccccggccccctcaggacctcatcggcctgcgcctggcccaggagaaggccttaaagcgg
cagctggaggaggaacagaagctgaagccggggggagccccctcctcgtcctcctcttcc
tcagcccggcccggccctccccagccggaggaagccatagatttccgggaggaggggccc
gagtgtgagaccccggccatcttcatcagcatggatgacgactcggggctgaccgaggcc
gcactgctggactctagtcttgaggggcccctacccaaggaggcagcagcgagcgggctg
accgccaaggaggagcggagcccccagaccctcacccctgccggagaagacaccgtgaag
acccccagccccgccgccgcagaggaagccggggaatccgagaacaaggggaacagctga
DBGET
integrated database retrieval system
