Equus caballus (horse): 100071007
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Entry
100071007 CDS
T01058
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ecb
Equus caballus (horse)
Pathway
ecb04140
Autophagy - animal
ecb04142
Lysosome biogenesis
ecb04145
Phagocytosis
ecb04148
Efferocytosis
ecb05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
100071007 (VPS39)
04142 Lysosome biogenesis
100071007 (VPS39)
04140 Autophagy - animal
100071007 (VPS39)
04148 Efferocytosis
100071007 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100071007 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecb04131
]
100071007 (VPS39)
Membrane trafficking [BR:
ecb04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100071007 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
LIF1_N
VPS18_solenoid_2nd
DUF4145
KCTD11_21_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
100071007
NCBI-ProteinID:
XP_023475014
Ensembl:
ENSECAG00000004287
VGNC:
24929
LinkDB
All DBs
Position
1:148050128..148091108
Genome browser
AA seq
899 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWGEPRGRGSEGPRPEEWLLVGTKQGHLLLYRIRKDVV
PADVASPESGRCNRFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQ
ITTVSKAKGASLFTCDLQHTETGEEVLRMCVAVKKKLQLYFWRDREFHELQGDFSVPDVP
KSMAWCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTV
VLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFI
TSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHH
IKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGA
ELEKAHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKC
YLHTNVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSK
KANSPLKGHERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDR
VLGFLVENFKGLAIPYLEHVIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTP
VPAGEEEGELGEYRRKLLVFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALF
IYVHVLKDTRMAEEYCHKHYDQNKDGNKDVYLSLLRMYLSPPSVHCLGPIKLELQEPQAN
LQAALQVLELHHSKLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHA
EFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgatcttagaaaagctgcctctgcagatcgactgt
ctggctgcctggggtgagccgaggggccgagggtccgaggggccgaggccagaggaatgg
cttctcgttggaaccaaacaaggacatcttcttctctataggattcggaaggatgttgtg
ccagcagatgtagcatcacctgaaagtggccgttgcaacaggtttgaagtgacactagag
aaatccaataagaacttctccaaaaagattcagcagatccatgtggtttcccagtttaag
attctggtcagcttgttagaaaataatatttatgtccatgacctattgacatttcaacaa
atcactacggtttcaaaggcaaaaggagcatcactgttcacatgtgacctccagcacaca
gagactggtgaggaggtgttgcggatgtgtgtagctgtgaaaaagaagctgcagctctat
ttctggagggacagggaatttcatgaattgcagggggactttagtgtaccagatgtgccc
aagtccatggcatggtgtgaaaattctatctgtgtgggtttcaagagagactactaccta
ataagggtggatggaaaggggtccatcaaagagctcttcccaacaggaaaacagctggaa
cccttagttgcacctctggcagatggaaaagtggctgtgggtcaggatgatctcaccgtg
gtgctcaatgaggaggggatctgcacacagaaatgtgctctcaactggacagacataccg
gtggccatggagcaccagcctccctacatcattgcagtgttgcctcgatatgtggagatc
agaacatttgagccgaggctcctggtccagagcattgaattgcaaaggccccgtttcatt
acctcgggaggatcaaacattatctatgtggccagcaatcattttgtctggagactcatt
cctgtccctatggcaacccaaatccaacagcttctccaggacaagcagtttgaattggct
ctacagctcgcagaaatgaaagatgattctgacagtgaaaagcagcaacagatccatcat
atcaagaacttgtatgccttcaacctcttctgccagaagcgttttgatgagtccatgcag
gtctttgctaagcttggcacagatcctacccatgtgatgggcctgtacccggacctgctg
cccacagactataggaagcagctgcagtaccctaacccgctgccggtgctctctggggct
gagctggagaaggctcacttagctctgattgactacctgacacagaaacgaagccaactg
gtaaagaagctgaatgactctgatcaccagtcgagtacctccccgctcatggagggcact
cccaccatcaaatccaagaagaagttgttacaaatcatcgacaccaccctgctcaagtgc
tacctccatacgaacgtggccctggtggcccccttactgcgcctggagaacaatcactgc
cacatcgaagagagcgagcacgtgctgaagaaggcccacaagtacagtgaactgataatc
ctgtacgagaagaaggggctccacgagaaagctctgcaggtgctggtggaccagtccaag
aaagcgaactcccctctgaaaggccatgagaggaccgtgcagtacctgcaacacctgggc
accgaaaacctgcatttgattttttcctactcagtgtgggtgctgagagacttcccagag
gatggcctaaagatatttacggaagacctcccggaggtggagtctctgccacgagaccga
gtgctcggcttcctagtagagaactttaagggtctggctattccttatctggaacatgtc
atccacgtttgggaggagacaggctctcggttccacaactgcctgatccagctgtactgt
gagaaggtgcaaggtctgatgaaggagtatctcctgtccttcccggcaggcaaaactcca
gtccctgctggagaggaagagggtgagctgggagaataccgacggaagcttcttgtgttc
ttggaaatttccagctactatgatccaggccggctcatctgtgactttccttttgatggc
ctcttggaagaacgtgctctcctgctgggccgcatggggaaacacgagcaagctctcttc
atctacgtccacgtcctgaaggatacaaggatggctgaggaatactgccacaagcattat
gaccaaaacaaagacggcaacaaagatgtgtatctgtccttgctgcggatgtacctgtcg
ccacccagcgtacactgcctggggccaatcaagctggaactgcaggagccacaggccaac
ctccaggctgcccttcaggtcctcgagctgcaccatagcaaactggacaccaccaaggcc
atcaaccttctgccagcaaacactcagattaacgatatacgcatctttctggaaaaggtc
ttggaagaaaatgcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgca
gaattcctgagggtccaggaagagcggattttacaccagcaggtgaagtgcatcatcacg
gaggagaaggtgtgcatggtgtgtaagaagaagattgggaacagtgcatttgcaagatac
cccaacggagtggtcgtgcactacttctgttccaaagaggtaaacccggctgacacctga
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