Equus caballus (horse): 100071048
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Entry
100071048 CDS
T01058
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ecb
Equus caballus (horse)
Pathway
ecb03082
ATP-dependent chromatin remodeling
ecb04714
Thermogenesis
ecb05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100071048 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100071048 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100071048 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecb03000
]
100071048 (ARID1A)
03021 Transcription machinery [BR:
ecb03021
]
100071048 (ARID1A)
03036 Chromosome and associated proteins [BR:
ecb03036
]
100071048 (ARID1A)
Transcription factors [BR:
ecb03000
]
Eukaryotic type
Helix-turn-helix
ARID
100071048 (ARID1A)
Transcription machinery [BR:
ecb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100071048 (ARID1A)
Chromosome and associated proteins [BR:
ecb03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100071048 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
100071048
NCBI-ProteinID:
XP_023491171
Ensembl:
ENSECAG00000017991
VGNC:
15498
LinkDB
All DBs
Position
2:complement(28917834..28985225)
Genome browser
AA seq
2283 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGP
AVGPPQPLGKELQDGAESNGGGGGGGAGGGGGPGAEPDLKNSNGNAGPRPALNNNLTEPP
GGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGL
AALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPGS
GAVAAAGSKPPPSSSASASSSSSSFAQQRFGAMAGGGPSAAGGGTPQPTATPTLNQLLTS
PSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGSAAAAAAAAAASGGAQQRSHHAP
MSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQP
YGSQTPQRYPMTMQGRAQSTMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQ
QPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPTPYPSQQSTT
QQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQ
ELSQDSFGSQASSAASMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGV
STSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPA
GNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQ
MHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQ
MHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETAVA
MHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAG
MAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPER
KMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNL
NVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGS
MQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMRSNSVGIQDAFPDGSDPTFQK
RNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYS
RAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSNPDSGMYSP
SRYPPQQQQQQQRHDSYGNQFPTQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAK
RHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATAAAA
TERRPAGGPQNQFPFQFGRDRVSAPPGSNAQQTMPPQMMGGPIQASAEVAQQGTMWQGRN
DMTYNYANRQNTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSAPVP
PMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPVPA
SHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGLLA
ESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQR
TLLDPGRFSKASSPAPMEGEEEEEDLLGPKLEEEEEEEVVENDEEMAFSGKDKAASENSE
EKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESK
TELLPTRPQVPYPPVTRKLVTAAEGTPGTTEQEGPPPDGPPEKRITATMDDMLSTRSSTL
TEEGAKTAEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCV
CVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVS
CNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDP
FSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPV
CREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNPP
FEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLI
GQS
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcgggaggaggcggggggcgaggcggcggcg
gcggcagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggcccc
gccgtggggccgccgcagccgctgggaaaagagctgcaggacggggccgagagcaatggg
ggtggcggcggcggcggagccggaggcggcggcgggcccggcgcggagccggacctgaag
aactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgccc
ggcggcggcggcggcggcagcagcgatggggtgggggcgcctcctcactcagccgcggcc
gccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtc
gccgccgcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctg
gcagcgctgcagagcggcggcggcgggggcctggagccctacgcggggccccagcagaac
tcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcc
taccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccgggctcc
ggcgcggtagcggccgccggctccaagccgcctccctcctccagcgcctccgcctcctcg
tcgtcttcgtccttcgctcagcagcgcttcggggccatggcgggaggcggcccctccgcg
gctggcgggggaaccccccagcccaccgccacccccaccctcaaccaactgctcacgtcg
cccagctcggcccggggctaccagggctaccccgggggcgactacggcggcgggccccag
gacgggggcgccggcaagggcccggcggacatggcctcgcagtgctgggggtctgctgcg
gcggcggcggcggcggcagccgcctcgggaggggcccaacaaaggagccaccacgcgccc
atgagccccgggagcagcggcggcggggggcagccgctcgcccggaccccgcagccatcc
agtccaatggatcagatgggcaagatgagacctcagccatatggcgggactaacccatat
tcgcaacaacagggacctccgtcaggaccacagcaaggacatgggtacccagggcagcca
tacgggtcccagaccccgcaacggtacccgatgaccatgcagggccgggcgcagagtacc
atgggcggcctctcttatgcacagcagattcctccttatggacaacaaggccccagtggg
tatggtcagcagggccagactccatattacaaccagcaaagtcctcatccccagcagcag
cagccaccctactcccagcaaccaccatcccagacccctcatgcccaaccttcatatcag
cagcagccacagtctcagccaccacagctccagtcctctcagcctccatattcccagcag
ccatcccagcctccacatcagcagtccccgactccatacccctcccagcagtccacgacc
cagcagcacccccagagtcagcccccctactcacagccgcaggcacagtctccctaccag
cagcagcaacctcagcagccagcatcctcgacgctctcccagcaggctgcgtaccctcag
ccccaatctcagcagtcacagcaaactgcctattcccagcagcgcttccctccaccgcag
gagttatctcaagattcatttgggtctcaggcatcctcagccgcctcaatgacctccagt
aagggagggcaagaagatatgaacctgagtcttcagtcaagaccctcaagcttgcctgat
ctgtctggttcaatagatgatctccccatggggacagaaggagctctgagccctggagtg
agcacatcagggatttccagcagccaaggagagcagagtaatccagctcagtctcctttc
tctcctcatacctcccctcacctgcctggcatccgaggcccctccccgtctcctgttggc
tctcctgccagtgttgctcagtctcgctcaggaccactttcgcctgctgcagtgccagca
ggcaaccagatgccacctcggccacccagtggccagtcggacagcatcatgcatccttcc
atgaaccaatcgagcattgcccaagatcgaggttatatgcagaggaacccccagatgccc
cagtacagttccccccagcccggctcagccttatctccacgtcagccttctggaggacag
atgcacacaggcatgggctcctaccagcagaactccatggggagctatggtccccagggg
agtcagtacggcccacagggaggctacccaaggcagccaaactataatgccttgcccaac
gctaactaccccagtgcgggcatggctggaagcatgaaccctatgggtgctggaggtcag
atgcatggacagcctggcatccccccttatggcacacttcctccagggagaatgagtcac
gcctccatgggcaaccggccttatggccctaacatggccaatatgccacctcaggttggg
tcagggatgtgtcccccaccagggggcatgaaccggaaaactcaagaaactgctgtcgcc
atgcatgttgctgccaactctatccaaaacaggccaccaggctaccccaatatgaatcag
gggggcatgatgggaactggacctccctatggacaagggattaatagtatggctggcatg
atcaaccctcagggacccccatatcccatgggtggaaccatggccaacaattcagcaggg
atggcagccagcccagaaatgatgggccttggggatgtcaagttaactccagccaccaaa
atgaacaacaaggcagatgggacacccaagacagaatccaaatccaagaaatccagttct
tctactacaaccaatgagaaaatcaccaagttgtatgagctgggtggtgagcctgagagg
aagatgtgggtggaccgttatctggccttcacggaagagaaagccatgggcatgacaaat
ctgcctgctgtgggtaggaaacctctggacctgtatcgcctctatgtgtctgtgaaggag
attggtggattgactcaggtcaacaagaacaaaaaatggcgggaacttgcaaccaacctc
aatgtcggcacctcaagcagtgctgccagctcgttgaaaaagcagtatatccagtgtctc
tatgcctttgagtgcaagattgaacggggagaagaccctcccccagacatctttgcagct
gctgattccaagaagtctcagcccaagatccagcctccctctcctgcgggatcaggatct
atgcaggggccgcagacacctcagtcaaccagcagttccatggcagaaggaggagacctg
aagccaccgactccagcatccacaccacacagtcagatcccccccttgccaggcatgagg
agcaattcagtcgggatccaggatgcctttcctgatggaagtgaccccacattccagaag
cggaattccatgactccaaaccctgggtaccagcccagtatgaatacctctgacatgatg
gggcgcatgtcctacgagccaaataaggatccttatggcagcatgaggaaagctccaggg
agtgatcccttcatgtcctcagggcagggccccaatggcgggatgggggacccctacagt
cgagctgccggccctgggctaggaaatgtggcgatgggaccgcgacagcactatccctat
ggaggtccttatgacagagtgaggacggagcctggaataggacccgagggaaacatgggc
actggagctccacagccgaatctcatgccttccaacccagactcggggatgtattctcct
agccgctaccccccacagcagcagcagcagcagcaacgacatgattcctatggcaatcag
ttccccactcaaggcaccccttctggcagccctttccccagccagcagaccacaatgtat
cagcagcagcagcagaattacaagcggccgatggatggcacatatggccctcctgccaag
cggcacgaaggggagatgtacagcgtgccatacagcacagggcaggggcagccccaacag
cagcaactgcccccagcccagccccagcctgccagccagcaacaagctgcccagccttct
cctcagcaagatgtgtacaaccagtatggcaatgcctatcctgccactgctgctgctgct
actgagcgccgaccagcaggtggcccccagaaccagtttccattccagtttggccgagac
cgtgtctctgcaccccctggctccaatgcccagcagaccatgccaccgcaaatgatgggc
ggccccatacaggcatcggctgaagttgctcagcaaggcactatgtggcaggggcgtaat
gacatgacctacaattatgccaacaggcagaacacgggctctgccccccagggccctgcc
tatcatggcgtgaaccgaacagatgaaatgctgcacacggatcagagggccaaccatgaa
ggcccgtggccttcccatggcacacgccagcccccatatggtccctctgcccctgttccc
cccatgacaaggccccctccatccaactaccagcccccaccaagcatgcagaatcacatt
cctcaggtatccagccctgctcccctgccccggccaatggagaaccgcacctctcccagc
aagtctccattcctgcactctgggatgaagatgcagaaggcaggtcccccagtacctgcc
tcacacatagcacctgcccctgtgcagccccccatgattcggcgggacatcaccttccca
cctggttctgttgaagccacacagcctgtattgaagcagaggaggcgcctcacaatgaaa
gacatcggaaccccggaggcatggcgggtaatgatgtccctcaagtctgggctgctggca
gagagcacgtgggcattagacaccattaacatcctgttgtatgatgacaacagcatcatg
accttcaacctcagtcagctcccagggttgctagagctccttgtggaatatttccgacgt
tgcctgatcgaaatctttggcattttaaaggagtatgaggtgggtgatccaggacagaga
acactactggaccctgggagattcagcaaggcgtctagtccagcacccatggagggggag
gaggaggaggaagaccttctaggtcctaaactagaggaggaagaagaagaggaagtagtt
gaaaatgatgaggagatggccttttcgggcaaggataaggcagcctcagagaatagtgag
gagaaactgattagtaagtttgacaagcttccagtaaagattgtgcagaagaacgaccca
tttgtggtagactgctcagataagcttgggcgcgtgcaggagtttgacagtggcctgcta
cactggcggattggtgggggggacaccactgagcatatccagacccactttgagagcaag
acagagctgctgcctacccggcctcaagtgccctacccaccagtcacccggaaacttgtc
acagcggcagagggtacaccagggacaacagagcaggagggtcccccacctgatggccct
ccagaaaaacggatcacagccactatggatgacatgttgtccactcggtctagcacattg
accgaggagggagctaagactgcagaggccaccaaggagagcagcaagtttccatttggc
atcagcccggcacagagccaccggaacatcaaaatcctagaggatgaaccccacagtaaa
gatgagaccccactgtgtacccttctggactggcaggattcccttgccaaacgctgtgtc
tgtgtctccaataccatccgaagcctgtcatttgtgccaggcaacgactttgagatgtcc
aaacacccagggctgttgctgatcctgggcaagctgatccttctacaccacaagcaccca
gaacggaagcaggcaccactaacttatgagaaggaggaggagcaggaccagggggtgagc
tgcaacaaagtggagtggtggtgggactgcttggagatgctgcgggaaaacactttggtc
acgctcgccaacatctcggggcagttggacctctccccataccccgagagcatttgcctg
cctgtcttggacggactcctacactgggcagtctgcccttcagctgaagcccaggacccc
ttctccaccctgggccccaatgccgtcctctccccccaaagactggtcttggaaaccctc
agcaaactcagcatccaggacaacaatgtggacctgatcctggccacgcccccctttagc
cgcctggagaagttgtatagcaccatggtgcgcttcctcagtgaccgaaagaacccggta
tgccgggagatggccgtggtactgctggccaacctggcgcagggcgacagcctggcagcc
cgtgccattgcagtgcagaagggcagcatcggcaacctcctgggcttcctggaggacagc
cttgctgccacacagttccagcagagccaggccagcctgctccacatgcagaatccaccc
tttgagccaactagtgtggacatgatgcggcgggctgcccgcgcgctgctagccctggcc
aaggtggacgagaaccactcggagttcacgctgtacgagtcacggctgttggacatctct
gtatcaccgttgatgaactcattggtttcacaagtcatttgtgatgtactgtttttgatt
ggccagtcatga
DBGET
integrated database retrieval system
