Equus caballus (horse): 100071995
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Entry
100071995 CDS
T01058
Symbol
PABPC5
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
ecb
Equus caballus (horse)
Pathway
ecb03015
mRNA surveillance pathway
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100071995 (PABPC5)
09123 Folding, sorting and degradation
03018 RNA degradation
100071995 (PABPC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100071995 (PABPC5)
03041 Spliceosome [BR:
ecb03041
]
100071995 (PABPC5)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100071995 (PABPC5)
mRNA cycle factors
Stress granule specific factors
100071995 (PABPC5)
Spliceosome [BR:
ecb03041
]
Complex C
Other components
Complex C specific factors
100071995 (PABPC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_7
RRM_3
TC1
Motif
Other DBs
NCBI-GeneID:
100071995
NCBI-ProteinID:
NP_001244114
Ensembl:
ENSECAG00000003452
UniProt:
F6YM53
LinkDB
All DBs
Position
X:75373044..75376982
Genome browser
AA seq
382 aa
AA seq
DB search
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKG
FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRAP
GVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEEATKAVDE
MNGRIMGSKPLHVTLGQARRRW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggggagtggggagcctaatcctgctggcaagaagaagaagtacctcaaggctgccctg
tacgtgggtgacttggacccagatgtcaccgaggacatgttatataaaaagttcaggcct
gctggccctctgcgcttcacccgaatctgccgtgacccggtgacccgcagccccctgggc
tatggctatgtcaactttcgctttcctgcggatgctgagtgggctctgaacaccatgaat
tttgatttgattaatggcaaaccattccgcctcatgtggtctcagccagatgaccgctta
agaaagtctggggttggaaatatattcatcaaaaatctggacaaatccatagacaatagg
gcccttttttatttattttctgcttttgggaacattctctcctgcaaagtcgtatgtgat
gacaacggctctaaaggttatgcctatgtgcactttgacagtctggcggctgccaatagg
gccatctggcatatgaatggagtgcggctcaacaaccgccaggtgtatgttggccgattc
aaatttccggaagagcgggcagctgaagtcagaaccagagatagagcaactttcaccaat
gttttcgttaaaaattttggagatgacatggatgacgaaaaactgaaggaaattttcagt
gaatatgggtcaactgagagtgtgaaggtaataagagatgccagtgggaaatctaaaggc
tttggatttgtgagatatgagacacatgaggctgcccaaaaggctgtgttagacctgcat
ggaaagtccatcgatggaaaagtcctatatgtagggcgagcacagaagaaaattgaacgt
ctggctgagttaaggcgaagatttgaacggctgagattaaaggaaaaaagtcgggctccg
ggagtgcctatctatattaagaacctggatgagaccattgatgatgaaaaactgaaggag
gaattttcttcctttggatcaattagccgggccaaagtgatggtggaagtggggcaaggc
aaagggtttggtgttgtctgcttctcctctttcgaggaggctaccaaagcagtggatgag
atgaatggtcgcataatgggctccaagcccctgcatgtcaccctgggccaggccaggcgt
aggtggtga
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