Equus caballus (horse): 100072210
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Entry
100072210 CDS
T01058
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ecb
Equus caballus (horse)
Pathway
ecb03015
mRNA surveillance pathway
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100072210
09123 Folding, sorting and degradation
03018 RNA degradation
100072210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100072210
03041 Spliceosome [BR:
ecb03041
]
100072210
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100072210
mRNA cycle factors
Stress granule specific factors
100072210
Spliceosome [BR:
ecb03041
]
Complex C
Other components
Complex C specific factors
100072210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
Motif
Other DBs
NCBI-GeneID:
100072210
NCBI-ProteinID:
XP_023489223
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All DBs
Position
X:70854649..70857031
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AA seq
703 aa
AA seq
DB search
MAGGEERRRWRGGEKQRRGAGELGIRKSEATRGTDGPPPRAPKTAEPTHFSQSRRAGHAS
GVLARRPPPAWGASAPDGGRARTASQFGTLGLRGQCPRATLPFPAPKCPHSVGYLHPEVD
EAMLYEKFSTIGPILSIRFCLDPPSRCSLGYEYVNFSLQADTECALSTMNLDIINGKPLX
IRRSQRDPSLRESGVSNIFVKNLAKSIDTFSVFGNILSRKVVTNENGSRGFGFVHFEKSE
AATRAVAKMSGILLKGSRVFVGQFKPRKERETELRVKANMFTNVYIKNFGDDIDDKCLKE
VFGEFSSVLSVRVMTDESGKSKGFGFVSFEDAQKAIEGMNGKVLNGNRVYVGKAQNKVER
LSELKHKFEQMKPGKLTRCNGANVYVKNLEDDIDDKGLRREFPLFGTITSARVMTERGCS
TGFGXFCYTSEEAKEAIMAMNGKTVIPQPVHVAIAQGEVECQALLTQNYMERRADVGHGG
NPRLNSEASSSNFMPILPQPQCGSADLSKPVVRTKPHPSQNMRYVIHSAAAAAPKPSFST
FRPPQVPAVKSPYHITNTATQTKTVHPQTSSSGSHANQRFKKVARVCSHLKFKVGRPVSI
QKPVHICTQGHDMSNISVLASATTQEKILYKKLVPLVLSIQPTPAGEISRILLEMDDAEI
LYMLKYSESLRAKVYEAILILQSNQAQDTALKATNSTPSIQCV
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggagaggagaggaggcgatggcgaggaggggagaagcagagaaggggagcg
ggggagttagggatacgaaaaagcgaagcaacccgcggaacagacggcccgccaccccgg
gcgcctaagacggccgagccgacgcacttctcccagtcgcgccgggccggccacgcgtca
ggggtcctcgcacggcgccctcccccggcctggggcgccagcgcgcctgacggcggacga
gcgcgaactgcatcacagttcggcacgctgggcctccgcgggcaatgtccgcgggcaacg
cttccgttccccgctccgaaatgtcctcactctgtcggatacctgcaccccgaagtggac
gaggcaatgctgtatgagaaattcagcaccatcgggccgatcctgtccatcagattctgc
cttgacccgccctcgcgctgctctctgggctacgaatacgtgaacttctcgctgcaggcc
gataccgagtgcgctctgagcacgatgaacttggatattatcaatggcaagccactcnnt
attaggaggtctcagcgtgatccgtcacttcgtgagagtggagtgagcaatatattcgtc
aaaaatcttgccaagtctattgatacattttctgtctttggaaacattctttctcgtaaa
gtagtaaccaatgaaaatggatccaggggtttcgggtttgtgcattttgagaaatcggaa
gccgctacaagagccgtggcgaagatgagtggaattctgctgaaagggagccgagttttt
gttgggcagtttaaacctcgcaaagaaagggaaacagaacttagagtgaaagcaaacatg
tttacgaatgtttacatcaagaattttggagatgatatagatgataaatgtcttaaagag
gtttttggtgagtttagttctgtattaagtgtgagagttatgactgatgaaagtggaaaa
tccaaaggctttggatttgtgagttttgaagatgcccagaaagccatcgaaggaatgaac
ggaaaagtccttaatggaaatcgagtttatgttggtaaagcacagaacaaagtagagaga
ctatctgaattaaaacacaagtttgagcaaatgaaaccgggtaaactcaccaggtgcaac
ggtgctaatgtttatgtgaagaatcttgaagatgatattgatgataaaggactgagaaga
gaatttcccctctttggcacaatcacaagtgccagggtcatgacagagcgaggctgcagc
acaggctttggcnngttttgctacacgtctgaggaagctaaggaagccatcatggcaatg
aatggaaaaaccgtgatcccccaaccagtgcatgtggctattgcacaaggcgaggtggag
tgccaggctctcctcacccagaactatatggagagaagggcagatgtgggacatggaggt
aatcctagactcaactcagaagcctcctcaagtaacttcatgccaattcttcctcagcct
caatgtggaagtgcagatctcagcaaacctgtggttaggaccaaacctcatccatctcag
aatatgcgttatgttatccactcagcagcagcagcagcacctaagccatcattcagcacc
ttcagaccaccacaagtgcccgcagtcaagtcaccctatcatatcaccaatacagcaacc
cagaccaagactgttcaccctcaaacttcttcctcaggatcccatgcaaatcaaagattc
aaaaaagttgcacgtgtttgcagccatttaaaatttaaagtaggaaggccagtatccatc
cagaagcctgtccacatttgtacgcaaggtcatgatatgtcaaatatatctgtgttggca
tcagctactactcaggagaaaatcttgtataaaaagctggttcctctggttctatccatt
cagccaactccagctggagaaatctctcgcatactattggagatggatgacgctgaaatt
ctttatatgctcaagtatagcgagtctctccgtgccaaggtttatgaagccatcctcatt
ctgcagtccaaccaagctcaagatactgccctgaaagctactaacagcactcccagtatt
caatgtgtataa
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