Equus caballus (horse): 100072427
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Entry
100072427 CDS
T01058
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ecb
Equus caballus (horse)
Pathway
ecb03030
DNA replication
ecb03420
Nucleotide excision repair
ecb03430
Mismatch repair
ecb03440
Homologous recombination
ecb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100072427 (RPA1)
03420 Nucleotide excision repair
100072427 (RPA1)
03430 Mismatch repair
100072427 (RPA1)
03440 Homologous recombination
100072427 (RPA1)
03460 Fanconi anemia pathway
100072427 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecb03000
]
100072427 (RPA1)
03032 DNA replication proteins [BR:
ecb03032
]
100072427 (RPA1)
03400 DNA repair and recombination proteins [BR:
ecb03400
]
100072427 (RPA1)
Transcription factors [BR:
ecb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100072427 (RPA1)
DNA replication proteins [BR:
ecb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100072427 (RPA1)
DNA repair and recombination proteins [BR:
ecb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100072427 (RPA1)
MMR (mismatch excision repair)
100072427 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
100072427 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Ubiquitin_At1g33420
IBR
Motif
Other DBs
NCBI-GeneID:
100072427
NCBI-ProteinID:
XP_023508987
Ensembl:
ENSECAG00000023886
VGNC:
22508
LinkDB
All DBs
Position
11:45786698..45850190
Genome browser
AA seq
616 aa
AA seq
DB search
MVGYLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEEERLSSNCICQVNRFIVNTLKDGRRVVILMELEVLKSAEAVGLKIGNPVPYNE
GHGQQQVVPSPVSAASPPTSKPQPQNGSSGMGSTVSKAYGASKTFGKAGGASLVNSSGGT
QAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QADKFFPLLDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF
DFTGIGELENKPKDSLVDIIGICKSYEDATKITVKSNNREVSKRNIYLMDTSGKVVTTTL
WGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIMNPDISEAYKLRGWFDSEGQ
ALDGVSISDLKGGGTGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQA
CPSQDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETFNDESRIKATVMDVKPVDYR
EYGRRLIMNIRKNALM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggtgggctacctgagcgagggggccattgcggccataatgcaacagggagatacatcc
ataaaacccatcctccaagtcattaacattcgtcccattactacagggaatagtccaccc
cgttatcgactgcttatgagtgatggattgaacactctgtcctctttcatgttggcaaca
cagttgaacccccttgttgaggaagaacggctgtccagcaactgtatttgccaggttaac
cggtttattgttaatactctgaaagatggaaggagagtagttattttgatggagttagaa
gttttgaagtcagctgaagcagttggattaaagattggcaacccagtgccctataatgaa
ggacacgggcagcagcaagtagttccttctccagtctcagcagccagtccgccaaccagc
aagccccagccacagaatgggagctcaggaatgggttccactgtatctaaggcttatggt
gcctcaaagacttttggaaaagctggaggtgccagcctagtgaacagttctgggggaaca
caggccaaagtggtgcccattgccagcctcaccccttaccaatccaagtggactatttgt
gctcgtgtcaccaacaaaagtcagatccgcacctggagcaactcccggggggaagggaag
ctcttctccatagaactagttgatgaaagtggtgaaatcagagctactgctttcaatgag
caagcagacaagttctttccccttcttgacgtgaacaaggtctattatttctctaaaggc
actctgaagattgctaacaaacagttcacagctgttaaaaatgactatgagatgaccttc
aataatgagacttcagtgatgccctgtgaagatgaccatcacttacctacagttcagttt
gatttcacagggattggtgagctggagaacaagcctaaagactcacttgtagacataatt
gggatctgcaagagctatgaagatgccactaaaatcacagtgaagtctaacaacagagaa
gtttctaagagaaatatctatctgatggacacctcagggaaagtggtgaccactactctg
tggggagaagatgctgataggtttgatggttctagacaacccgtgatggctatcaaagga
gccagagtttctgattttggtggacggagcctctctgtgctgtcttcgagcacggtcatt
atgaatcctgacatctcagaggcctacaagctccgtggatggtttgactcagaaggacaa
gccttagatggtgtttccatctctgatctaaagggtggaggaacaggagggagcaacacc
aactggaaaactttatatgaggttaaatcggagaacctgggccaaggtgacaaggcggac
tattttagctctgtggcgacagtggtgtatcttcgcaaagagaactgtatgtatcaggcc
tgcccatctcaggactgcaataagaaagtgattgatcagcagaatggattataccgctgt
gagaagtgtgacagtgaatttcccagtttcaagtaccgcatgatcctgtcagtaaatatt
gctgattttcaagagaatcagtgggtcacttgtttccaggagtctgcagaggccatcctt
ggacaaaacactgcttatctcggggagttaaaagagaagaatgagcaggcatttgaggaa
gttttccagaatgccaacttccgatctttcacattcaggatcagggtcaaactagagacc
ttcaatgatgagtctcgaattaaggccactgtgatggacgtgaagcccgtggactacaga
gaatatggcagaaggctgatcatgaacatcaggaaaaacgcactaatgtga
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