Equus caballus (horse): 100072695
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Entry
100072695 CDS
T01058
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100072695 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecb00536
]
100072695 (COL13A1)
Glycosaminoglycan binding proteins [BR:
ecb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100072695 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100072695
NCBI-ProteinID:
XP_023499955
Ensembl:
ENSECAG00000018359
VGNC:
16724
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Position
1:58391032..58545005
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AA seq
786 aa
AA seq
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MVVERASKAATAGARGPGELGTPETVALAVAPAERCARLPSPGSCGLLVLAVCSLALSLL
AHFRTAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKLHSRRRREAPKTSPGCHCP
PGPPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFP
GFPGPIGLDGRPGHPGPKGEMGLMGPRGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAP
PPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGI
QGYHGRKGERGMPGMPGKQGAKGAPGIAVAGMKGEPGTPGAKGDPGAAGKPGPPGLPGKR
GQRGEKGAAGPPGPLGLLGHKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVEGRAG
PPGRQGDKGEPGATGEEGPAGPKGSKGEPGKEMVDYNGNINEALQEIRTLALMGPPGLPG
QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKAGPAGTKGEDG
HTGSPGEKGEKGEPGQAGPPGLDGPTGEKGEPGGQGRPGTTGLPGPIGLPGFTGEKGEAG
EKGDPGVEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGA
SGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGITGPTGAAGLPGLHGPPGDKGNRGE
RGKKGSRGPKGDKGDQGAPGLDAPCPLGHRGFKGEKGEPGLPGLDGLDAPCPLGEDGLPV
QGCWNK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggtagtggagcgcgccagcaaagcggcaaccgccggtgcccgcggccctggagagttg
ggcacgcccgagacggtggcgctagcggtggcgccggcggagcgctgcgcgcggctgccg
agcccggggtcgtgcgggctgctagtcctggccgtctgctcgctggcgctcagcctgctc
gcccactttcggacggccgagctgcaggcccgggtgctgcgcctggaagcggagcgaggg
gagcagcagatggagacggctattttgggacgagtcaaccaactgctggacgagaaatgg
aagctccactctcggaggcgccgggaggccccgaagacgtctccagggtgtcactgcccg
ccaggacctcctggtcccactggaaggcctggcctcccgggagacaaaggtgccattggg
atgcctggacgtgtgggcgtaaagggccaaccaggcgagaagggggccccaggagatgcc
ggcatgtccatcatcggtccccgtggcccccctggtcagccgggcactcgaggttttcct
ggatttccgggtcccattgggctggacggcagaccgggccaccccggaccgaaaggggag
atgggcctgatgggtccccgaggacagccgggacctcaaggacaaaaaggagaaaagggt
cagtgtggagagtacccacaccggctgctgcctctcctcaattcagtgcgactggctcca
cccccagtcataaaaaggcggaccttccagggtgagcagggccaggccggcatccaaggc
ccaccagggccaccagggccccctggaccgagtggacctctggggcacccgggactgcca
gggcccatggggccaccaggcttacctgggcctcctggaccgaagggagacccggggatc
cagggctaccacggccggaagggagaacggggcatgccagggatgccaggcaaacaggga
gcgaagggtgctcctggaatcgctgtggctgggatgaagggtgagccagggaccccagga
gccaagggagacccaggagcagcagggaagccggggcccccaggtttgccgggaaagagg
gggcagaggggtgagaagggggctgcaggcccccctgggccactcggcctcctggggcac
aagggagagaagggtgatgctggcaactccattggaggaggcagaggggagcctggcccc
ccagggctccctggacccccagggccgaagggagaagctggtgtcgaaggccgggccggg
cccccaggacggcaaggagacaagggggagcctggagcaactggagaagagggaccagct
ggccccaagggttccaagggagaaccggggaaagagatggtggattacaatggaaacatc
aatgaggctctccaggagatccgaacgctggccttgatggggccccctggtcttcccggg
cagatcggcccaccaggagctccagggatcccaggccagaagggggagattggactgcca
ggccctccaggacacgacggggagaagggacctcgaggcaaaccaggagacatgggccct
cctggtccccaaggcccccctgggaaggctgggcctgcaggaacgaagggagaagacgga
cacacggggagcccgggagagaagggggagaaaggggagccggggcaggcaggcccaccg
ggtctagacggcccaactggggagaaaggagaaccaggtggccaagggagacctggaaca
acaggattgcctggcccaatcgggctcccgggatttacaggagagaaaggagaagccggg
gagaagggagacccgggagtggaggttcctgggccaccagggccagaggggcctcctgga
cctccggggctccaaggtgttcctggaccaaagggggaagcaggactagatggagcaaaa
ggagagaagggcgtccagggagaaaaaggagaccgaggtcctctgggattacccggagct
tcaggtttggacggcaggcctgggccaccgggtactccaggaccaatcggagtcccaggc
ccggcgggaccaaagggcgagaggggcagcaaaggtgaccctgggataacaggaccaaca
ggagcagctgggcttcctggtttacatggaccacccggggacaaaggaaaccggggggag
agggggaagaaaggctctagagggcctaaaggggataagggagaccaaggagcgcctgga
ttagatgccccctgtccgttgggacaccgaggttttaaaggagagaaaggggagccaggg
ttaccagggctggacggactggatgccccgtgcccattgggcgaagacggcttacccgtc
cagggctgctggaacaagtga
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