Equus caballus (horse): 100072894
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Entry
100072894 CDS
T01058
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100072894 (COL25A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecb00536
]
100072894 (COL25A1)
Glycosaminoglycan binding proteins [BR:
ecb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100072894 (COL25A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100072894
NCBI-ProteinID:
XP_023492523
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All DBs
Position
2:116825678..117263297
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AA seq
715 aa
AA seq
DB search
MLVKKHAGKGGGRELGVEDRSPAEQRCARTVPPCAALTALLSVVAVMSCLYLGVKTNDLQ
ARIAALESAKGDPSIRLLPDCLDQLKAVVQEKVERLLAQKSYEHMAKIRIAREAPSDCNC
PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
PPGQKGSVGAPGIPGINGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
KGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGDKGDSGDLGPRGPPGQK
GDQGATEIIDYNGNLHEALQRMTTLTVTGPPGPPGPQGLQGPKGEPGSPGIPGADGEQGL
KGSKGDVGDPGMPGEKGGIGLPGLPGANGVKGEKGDSGLPGPQGPSIIGPPGPPGPHGPP
GPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEAGPRGPYGLPGKDGEPGLDGFP
GPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQKVGFIEF
FLKEALSLSPHLAWPFPFTTDLLNLTFLKIVWVLKSKRFHLQNIFRLMCLLLISS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaagaagcatgcggggaaaggagggggccgggagctgggcgtcgaggacaga
agccccgccgagcagcgctgtgcccggaccgtgcccccgtgcgcggccctgacggccctc
ctatcagtggtggccgtgatgtcttgtctgtacctgggggtgaaaaccaacgacttgcag
gcgaggatcgccgctctcgaatccgctaagggagacccttccatccgtctgctgcctgat
tgcctggaccagctgaaagcagtggtgcaagagaaagtggagcgacttctggctcagaag
tcctatgaacacatggctaaaataagaattgcaagagaagctccttctgactgcaactgc
ccggcaggccctccggggaaacgaggtaagaggggccgaagaggagaatctggtcctcct
ggtcagcctggtcctcagggtccacctggtccaaaaggtgataagggagaacaaggtgat
cagggaccgcggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcag
ctcattaaacgccgcctgattaagggtgaccaagggcaggctggccctccaggacctcca
ggccctccaggcccaagagggcctcctggggacactgggaaagacggcccccgtggaatg
ccaggagtgcccggtgaaccagggaaaccaggagaacaaggcttgatgggtcctctgggg
cctccaggacaaaagggttctgttggagcacctggaattccagggataaatgggcaaaag
ggtgagcccgggttgcctggagcagtaggacagaatggaataccggggccaaagggagaa
cctggagaacaaggagaaaagggagatgctggagagaatggccccaaaggtgacacaggc
gaaaagggtgaccctggatcgtctgctgcaggaattaagggagaacctggagaatctggt
cgtccagggcaaaagggtgaaccagggctgcctggccttcctggacttccggggataaag
ggagaaccaggtttcattggtcctcaaggggaaccaggcttaccagggttaccaggaaca
aagggtgaacgtggggaagcagggcctcctggaagaggcgagcgaggggagcctggagcc
cccggaccaaaggggaaacaaggtgaatcgggaactagaggcccaaaggggtcaaagggt
gatcgtggagacaaaggggattctggagacctgggaccaaggggtccacctggtcaaaag
ggagatcaaggagccaccgagatcatagactacaatggcaacctccacgaagccttgcag
aggatgaccaccctgaccgtcacgggtccccctggaccgcctggaccgcaaggactgcaa
ggcccaaagggagagccaggatctccaggaatcccaggagccgatggagagcaggggctc
aaaggctcaaagggagacgtgggggacccaggcatgccaggtgaaaaaggaggaattgga
cttcctggattaccgggtgccaatggagtgaaaggggagaaaggagactccgggctgcca
ggtcctcagggtccttctatcataggcccaccaggcccaccaggtccccatggcccacca
ggccccatgggaccccatggacttcctggaccaaagggtacagatggccctatgggaccc
catggccctgcgggtcccaaaggagaaagaggtgaaaaaggagctatgggagaggctgga
cccagagggccctacggtctgcctgggaaagatggagagcctggtctcgatggcttccct
ggtccacgaggcgagaagggtgatttaggagaaaagggagaaaagggattccgtggcgtt
aagggggaaaaaggggagccaggccagcctggcctggatgggctggatgccccttgccaa
ttggggccagatgggttacccatgcctggctgttggcaaaaggtaggctttatagagttc
tttctaaaagaagcgctctccctttctcctcacctggcctggccttttccatttacaaca
gaccttttgaatttgacattcctgaaaattgtttgggtattaaaaagcaaaagatttcat
ctccagaatatctttcgattaatgtgtttactgctgatttcttcctaa
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