Equus caballus (horse): 100146384
Help
Entry
100146384 CDS
T01058
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ecb
Equus caballus (horse)
Pathway
ecb03013
Nucleocytoplasmic transport
ecb03015
mRNA surveillance pathway
ecb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100146384 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
100146384 (DDX39B)
03015 mRNA surveillance pathway
100146384 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100146384 (DDX39B)
03041 Spliceosome [BR:
ecb03041
]
100146384 (DDX39B)
Enzymes [BR:
ecb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100146384 (DDX39B)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100146384 (DDX39B)
Spliceosome [BR:
ecb03041
]
Complex C
Other components
EJC/TREX
100146384 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100146384 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100146384
NCBI-ProteinID:
XP_005603751
Ensembl:
ENSECAG00000007750
UniProt:
F6R0A9
LinkDB
All DBs
Position
20:complement(32185872..32197049)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagatgatgaggtggagaca
gcagctgggggagatggagctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggttttcgtgacttcctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccttcagaagtccagcatgagtgtatccctcaggccatt
ctgggaatggatgtcctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacagctggaaccagttaccgggcaggtgtctgtgctggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggagtatgagcgcttctctaagtacatg
cccaatgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccacatattgttgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctggcccagctcttggtggagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctattcggccgaggcatggacatcgagcgggtgaacattgccttt
aactacgacatgcctgaggattctgacacctatctgcatcgggtggccagagcaggccgt
tttggcaccaaaggcttggccatcacatttgtgtcagatgagaatgatgccaagatactc
aatgatgtgcaggatcgctttgaggtcaatattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
